Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat Developing 384-plex SNP marker sets for breeding and ... - icrisat
Diversity analysis with 384 indica/japonica indica Temp. japonica Group V (aromatic) Trop. japonica aus • Each 384-plex SNP set has inherent biases due to the SNP selection process • The appropriate SNP set must be chosen for each group of germplasm and specific application
Diversity analysis for salinity tolerance 118 rice varieties, including 62 salt tolerant Bangladesh landraces aus Aswina HanHongKe TakRatia Kalarata Asha Hasawi Kalisaita Lalmota Binni FL478 Swarna Harishankar Darial Depa Latisail Boilam BG90-2 IR29 PSBRc94 93-11 IR64 IR54 BRRIdhan4 5 TangkaiRotan BRRIdhan2 8 BRRIdhan2 9 CR1009 BR4 BRRIdhan3 0 BR10 BRRIdhan4 0 BR11 Rajasail indica Moynamoti Nonasail Kajalsail Madhumoti Ghigoj Changa i SR26B Ashfol ChikiramPatnai Sadaba lam Akundi KutiPatnai Morichsail Pokkali-19354 Patnai23 NonaBokra Capsule Ashfalbalam Sadamota Kalamosa Jataibalam Pokkali-28609 AusBako Dular Pokkali-15661 Surjamukhi BRRIdhan4 7 384-plex indica/indica OPA could distinguish subgroups within indica germplasm Agrani N22 JaliBoro Kaliboro Soloi FR13A Chiknol Kasalath Azucena Moroberekan japonica 0.1 Nipponba re Kalaboram Hanumanjata GopalBhog DomSufid Setkumra Koijuri Chapali Chinikanai Horcoach Gunshi Chapalia Dharikhachi Maidal Maitchal Kachra Hogla Ranisalute JolPaira Bamonkhir Salute Dorkumor Nonakochi Laxmikajal JamaiNadu Gadimuri Barisail Basmati370 NoyonMoni Birpala Bazail Rayada aromatic Pokkali-15602 Pokkali-15238 Pokkaliyan-36351 PokkalianBatticaloa Pokkali-117275 Pokkali-8948 Pokkalian-15704 Pokkalian-15507 Pokkalian-47407 Pokkali-IRRI Cheriviruppu Pokkali-108921 Pokkaliyan-31513 Pokkali-15388 Pokkali Pokkali-26869
- Page 1 and 2: Developing 384-plex SNP marker sets
- Page 3 and 4: SSR markers have some disadvantages
- Page 5 and 6: Rice sequence has enabled SNP disco
- Page 7 and 8: IR64 IAC 165 M202 Moroberkan Dom Su
- Page 9 and 10: Illumina GoldenGate SNP genotyping
- Page 11 and 12: BeadXpress 384-plex SNP sets for ri
- Page 13: Diversity analysis with 384 indica/
- Page 17 and 18: SNP versus SSR throughput Manual PA
- Page 19 and 20: Activities to develop SNP tools for
- Page 21 and 22: Relevant informatics tools are stil
- Page 23: For further information: • Zhao e
Diversity analysis with <strong>384</strong> indica/japonica<br />
indica<br />
Temp.<br />
japonica<br />
Group V<br />
(aromatic)<br />
Trop. japonica<br />
aus<br />
• Each <strong>384</strong>-<strong>plex</strong> <strong>SNP</strong> set has<br />
inherent biases due to the <strong>SNP</strong><br />
selection process<br />
• The appropriate <strong>SNP</strong> set must<br />
be chosen <strong>for</strong> each group of<br />
germplasm <strong>and</strong> specific<br />
application
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