Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat
Developing 384-plex SNP marker sets for breeding and ... - icrisat
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BeadXpress <strong>384</strong>-<strong>plex</strong> <strong>SNP</strong> <strong>sets</strong> <strong>for</strong> rice<br />
• 96 samples x <strong>384</strong><br />
<strong>SNP</strong> <strong>marker</strong>s per run<br />
• Less than $0.10 per<br />
<strong>marker</strong> data point<br />
Illumina BeadXpress Reader<br />
Working with Susan McCouch (Cornell<br />
University) to develop custom <strong>384</strong>-<strong>plex</strong><br />
<strong>SNP</strong> <strong>sets</strong> <strong>for</strong> different subgroups:<br />
• <strong>384</strong>-<strong>plex</strong> <strong>for</strong> indica x japonica<br />
populations<br />
• <strong>384</strong>-<strong>plex</strong> <strong>for</strong> indica <strong>and</strong> aus<br />
germplasm<br />
AA<br />
AB<br />
BB<br />
Automated <strong>marker</strong> scoring
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