LIFE09200604002 Lalit Sehgal - Homi Bhabha National Institute

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DECLARATION I declare that the thesis titled ‘Generation of knockdown mice that lack 14-3-3ε and 14-3- 3γ using RNA interference’ is a record of the work carried out by me during the period September 2006 to December 2011 under the supervision of Dr. Sorab N Dalal. This work is original and it has not been submitted earlier as a whole or in part for a degree, diploma, associateship or fellowship at this or any other institute or university. Navi Mumbai, July 2012. Lalit Sehgal 4
CERTIFICATE I certify that the thesis titled ‘Generation of knockdown mice that lack 14-3-3ε and 14-3- 3γ using RNA interference’ submitted for the degree of Doctor of Philosophy by Lalit Sehgal is a record of the research carried out by him during the period September 2006 to December 2011 under my supervision. This work has not formed the basis for the award of any degree, diploma, associateship or fellowship at this or any other institute or university. Navi Mumbai, July 2012. Sorab N Dalal 5
Page 1 and 2: Generation of knockdown mice that l
Page 3: STATEMENT BY AUTHOR This dissertati
Page 7 and 8: I am thankful to Mr Uday Dandekar f
Page 9 and 10: 3.16 Isolation of Genomic DNA (gDNA
Page 11 and 12: A synopsis of thesis to be submitte
Page 13 and 14: esults in loss of 14-3-3 binding an
Page 15 and 16: and NheI (NEB) to remove tetO-CMV,
Page 17 and 18: Hanging drop and wound healing assa
Page 19 and 20: 360). To generate transgenic animal
Page 21 and 22: asement of the seminiferous tubules
Page 23 and 24: normal female, pups were screened f
Page 25 and 26: 14-3-3ε only in the presence of HP
Page 27 and 28: proteins are expressed in testis (3
Page 29 and 30: 5. Lalit Sehgal, Srikanth B., Khyat
Page 31 and 32: Presented a poster at 33rd All Indi
Page 33 and 34: shRNA siRNA TBS-T U.V WT C IF DSG D
Page 35 and 36: List of Figures: Page No 1. Figure
Page 37 and 38: 37. Figure 4.3.20: 14-3-3γ interac
Page 39 and 40: CHAPTER 1 INTRODUCTION 39
Page 41 and 42: 1.1.1 Cyclin Cdk complexes Eukaryot
Page 43 and 44: 1.1.1.c Cyclin A cdk complexes The
Page 45 and 46: of which are associated with acquis
Page 47 and 48: 1.2.2 The G1/S DNA Damage checkpoin
Page 49 and 50: complexes. DNA damage induced degra
Page 51 and 52: cytoplasmic accumulation of cdc25 p
Page 53 and 54: 14-3-3 binding site. 14-3-3 binding
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G2 arrest and induced premature chr
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emoval of S216 phosphorylation as i
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embryogenesis, a loss of cdc25A can
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dimer was essential for Raf activat
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of enhanced apoptosis of peripheral
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the generation of transgenic mice a
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CHAPTER 2 AIMS AND OBJECTIVES 67
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CHAPTER 3 MATERIALS AND METHODS 69
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Name of oligonucleotide EF1α Forwa
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cleavage sites GAAGGTATATTGCTGTTGAC
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R E1 A GAACGAATAGTGAAGCCACAGATGTA s
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100mm 25ug 225ul 250ul 500 1000ul T
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for the transgene were considered a
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solution in TBS-T containing 0.02%
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mounting agent. Confocal images wer
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3.26 Antibodies used for Western bl
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each plate was added cold 500ml of
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3.32 Hanging drop assay to determin
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3.37 Biodistribution of 18 F -FDG u
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2.5M NaCl 150mM 60ml Tween-20 (Sigm
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CHAPTER 4 RESULTS 95
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Figure 4.1.1 Generation of lentivir
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4.1.2 Generation of lentiviral vect
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transduction with the virus. Untran
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Figure 4.1.6: Application of bi-cis
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Figure 4.1.7: Application of bi-cis
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Figure 4.2.1: Infection of morulae
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Figure 4.2.2: Generation of transge
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Figure 4.2.3: EGFP-f expression in
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sequenced and the distribution amon
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4.3 Generation of 14-3-3γ knockdow
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numbering). Alignment was done usin
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presence of EGFP-f by performing po
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the mouse tested infected with vect
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Figure 4.3.7: Staging of 14-3-3γ k
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containing spermatozoa is on the Y-
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Figure 4.3.9: 14-3-3γ knockdown le
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Figure 4.3.11: 14-3-3γ knockdown i
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intercellular space (12, 110, 115,
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Figure 4.3.13: 14-3-3γ loss leads
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Figure 4.3.16: Localization of PKP3
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Figure 4.3.18: Reintroduction of sh
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A B 139
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from our laboratory demonstrated th
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Figure 4.3.21: Plakoglobin recruitm
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4.3.23 (A and B)). These proteins g
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the desmosomal proteins recruitment
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Figure 4.3.25: Generation of stable
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KIF5B, however its reduction does n
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compared to vector control cells. (
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4.4 Generation of 14-3-3ε knockdow
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into the interstitial spaces of the
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Figure 4.4.3: 14-3-3ε knockdown in
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Figure 4.4.4: Patchy hair loss in 1
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follicle formation marked by black
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Figure 4.4.7: Phenotypes in 14-3-3
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compared to WT lungs (indicated by
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compared to wild type (Figure 4.4.1
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and CD4 positive lyumphocyte number
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Figure 4.4.13: Bone marrow cells fr
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Figure 4.4.15: Generation of stable
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Figure 4.4.16: NIH3T3 cells lacking
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Figure 4.4.18: Generation of induci
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CHAPTER 5 DISCUSSION 181
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to generate transgenic animals expr
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transgenic research and the use of
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(reviewed in (152, 374)). Kinesins
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subtypes known to date. Type IV col
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Figure 5.1 Schematic representation
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loss of 14-3-3ε the T cell activat
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BIBLIOGRAPHY: 1. Abraham, R. T. 200
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29. Blomer, U., L. Naldini, T. Kafr
Page 199 and 200:
58. Cheng, C. Y., and D. D. Mruk. 2
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90. Elia, A. E., P. Rellos, L. F. H
Page 203 and 204:
118. Girard, F., U. Strausfeld, J.
Page 205 and 206:
150. Herrmann, H., M. Haner, M. Bre
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and activation of a cyclin E-cdk2 c
Page 209 and 210:
213. Liu, D., J. Bienkowska, C. Pet
Page 211 and 212:
242. Moll, R., W. W. Franke, D. L.
Page 213 and 214:
274. Pagano, M., R. Pepperkok, F. V
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305. Russell, L. D. 1978. The blood
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inhibitor of metalloproteases-1 in
Page 219 and 220:
364. Tsunekawa, N., M. Matsumoto, S
Page 221 and 222:
397. Yashiro, M., N. Nishioka, and
Page 223:
Research: Biology to Prevention to
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LIFE09200604002 Lalit Sehgal - Homi Bhabha National Institute

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