Synopsis Publications: 1. Hussain T, Kotnis A, Sarin R and Mulherkar R. Establishment and characterization of lymphoblastoid cell lines from patients with Multiple Primary Neoplasms in the upper aero-digestive tract and healthy individuals. Indian J Med Res. 2012 Jun; 135(6):820-9. 2. Budrukkar A, Shahid T, Murthy V, Hussain T, Mulherkar R, Vundinti BR, Deshpande M, Sengar M, Laskar SG and Agarwal JP. Squamous cell carcinoma of base of tongue in a patient with Fanconi's anemia treated with radiation therapy: case report and review of literature. Head & Neck, 2010 Oct; 32(10):1422-7. 3. Hussain T and Mulherkar R. Lymphoblastoid cell lines: a continuous in-vitro source to study carcinogen sensitivity and DNA repair. (Review article; International Journal of Cellular and Molecular Medicine, in press). 4. Hussain T, Kotnis A, Sarin R and Mulherkar R. Genetic Susceptibility to Multiple Primary Neoplasms in the Upper Aero-Digestive Tract: Genotype Score and Phenotype Correlation. (communicated to Cancer letters) Poster/oral Presentations: 1. 2008: 13 th Human Genome Meeting “Genomics and the future of medicine”, India (poster presentation). 2. 2010: 29 th Annual Convention of Indian Association for Cancer Research, India (oral presentation). 3. 2010: 6 th Graduate Students Meet, ACTREC, Navi Mumbai, India (Award for best poster presentation). 4. 2011: 30 th Annual Convention of Indian Association for Cancer Research and International Symposium on “Signaling Network and Cancer”, CSIR-IICB, Kolkata India (Award for best poster presentation). 5. 2011: American Association of Cancer Research (AACR) international conference on “New Horizons in Cancer Research: Biology to prevention to Therapy” (poster presentation). 19
Synopsis References: 1. Bobba, R.; Khan, Y., Cancer in India – An Overview. GOR 2003, 5, (4), 93-96. 2. Cancer Incidence, Mortality and Prevalence Worldwide in 2008. GLOBOCAN 2008. 3. Fujita, M.; Rudoltz, M. S.; Canady, D. J.; Patel, P.; Machtay, M.; Pittard, M.Q.; Mohiuddin, M.; Regine, W.F., (1998) Second malignant neoplasia in patients with T1 glottic cancer treated with radiation. Laryngoscope 1998, 108, (11), 1853-55. 4. Khuri, F. R.; Kim, E. S.; Lee, J. J.; Winn, R. J.; Benner, S. E.; Lippman, S. M.; Fu, K. K.; Cooper, J. S.; Vokes, E. E.; Chamberlain, R. M.; Williams, B.; Pajak, T. F.; Goepfert, H.; Hong, W. K., The impact of smoking status, disease stage, and index tumor site on second primary tumor incidence and tumor recurrence in the head and neck retinoid chemoprevention trial. Cancer Epidemiol Biomarkers Prev 2001, 10, (8), 823-9. 5. Jhavar, S.; Sarin, R.; Mulherkar, R.; Benner, A.; Agarwal, J. P.; Dinshaw, K., Glutathione S transferase M1 or T1 null genotype as a risk factor for developing multiple primary neoplasms in the upper aerodigestive tract, in Indian males using tobacco. Oral Oncol 2004, 40, (1), 84-91. 6. Rydzanicz, M.; Wierzbicka, M.; Gajecka, M.; Szyfter, W.; Szyfter, K., The impact of genetic factors on the incidence of multiple primary tumors (MPT) of the head and neck. Cancer Lett 2005, 224, (2), 263- 78. 7. Kotnis, A.; Namkung, J.; Kannan, S.; Jayakrupakar, N.; Park, T.; Sarin, R.; Mulherkar, R., Multiple pathway-based genetic variations associated with tobacco related multiple primary neoplasms. PLoS One 2012, 7, (1), e30013. 8. Kotnis, A.; Kannan, S.; Sarin, R.; Mulherkar, R., Case-control study and meta-analysis of SULT1A1 Arg213His polymorphism for gene, ethnicity and environment interaction for cancer risk. Br J Cancer 2008, 99, (8), 1340-7. 9. Sie, L.; Loong, S.; Tan, E. K., Utility of lymphoblastoid cell lines. J Neurosci Res 2009, 87, (9), 1953-9. 10. Weinert, T.; Lydall, D., Cell cycle checkpoints, genetic instability and cancer. Semin Cancer Biol 1993, 4, (2), 129-40. 11. Zhao, H.; Spitz, M. R.; Tomlinson, G. E.; Zhang, H.; Minna, J. D.; Wu, X., Gamma-radiation-induced G2 delay, apoptosis, and p53 response as potential susceptibility markers for lung cancer. Cancer Res 2001, 61, (21), 7819-24. 12. Mah, L. J.; El-Osta, A.; Karagiannis, T. C., gammaH2AX: a sensitive molecular marker of DNA damage and repair. Leukemia 2010, 24, (4), 679-86. 13. Wang L.E.; Hu, Z.; Sturgis, E. M.; Spitz, M.R.; Strom, S. S.; Amos, C. I.; Guo, Z.; Qiao, Y; Gillenwater, A. M.; Myers, J. N.; Clayman, g. L.; Weber, R. S.; El-Naggar, a. K.; Mao, L.; Lippman, S.; Hong W. K.; Wei, Q., Reduced DNA repair capacity for removing tobacco carcinogen-induced DNA adducts contributes to risk of head and neck cancer but not tumour characteristics. Clin Cancer Res. 2010, 16, (7) 764-74. 14. Wang, L. E.; Cheng, L.; Spitz, M. R.; Wei, Q., Fas A670G polymorphism, apoptotic capacity in lymphocyte cultures, and risk of lung cancer. Lung Cancer 2003, 42, (1), 1-8. 15. Hong, W. K.; Lippman, S. M.; Itri, L. M.; Karp, D. D.; Lee, J. S.; Byers, R. M.; Schantz, S. P.; Kramer, A. M.; Lotan, R.; Peters, L. J.; et al., Prevention of second primary tumors with isotretinoin in squamous-cell carcinoma of the head and neck. N Engl J Med 1990, 323, (12), 795-801. 16. Lin, J.; Swan, G. E.; Shields, P. G.; Benowitz, N. L.; Gu, J.; Amos, C. I.; de Andrade, M.; Spitz, M. R.; Wu, X., Mutagen sensitivity and genetic variants in nucleotide excision repair pathway: genotypephenotype correlation. Cancer Epidemiol Biomarkers Prev 2007, 16, (10), 2065-71. 17. Kaufmann, W. K.; Paules, R. S., DNA damage and cell cycle checkpoints. FASEB J 1996, 10, (2), 238- 47. 18. Wu, X.; Zhao, H.; Amos, C. I.; Shete, S.; Makan, N.; Hong, W. K.; Kadlubar, F. F.; Spitz, M. R., p53 Genotypes and Haplotypes Associated With Lung Cancer Susceptibility and Ethnicity. J Natl Cancer Inst 2002, 94, (9), 681-90. 20
- Page 1: Genotype-Molecular Phenotype Correl
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- Page 9 and 10: Synopsis
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- Page 41 and 42: Review of Literature The yet undeci
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Materials and Methods h half of the
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Materials and Methods phenol and th
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Materials and Methods 7. Filter ste
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Materials and Methods viz. EXO-SAP
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Materials and Methods Table 2: List
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Materials and Methods SMAD6 AREG HM
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Materials and Methods 3.9 Effect of
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Materials and Methods fresh eppendo
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Materials and Methods Power SYBR Gr
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Results Objective 1 To generate EBV
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Results Fig. 8: Frequency of second
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Results Table 6: Demographics of he
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Results Fig. 10: Cell population do
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Results Fig. 12: Cell surface marke
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Results 4.1.5 Expression of ATM gen
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Results Objective 2 To compare the
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Results Fig. 17: Standardization of
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Results Fig. 19: Standardisation of
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Results The cells were incubated fu
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Results 4.2.3.1 Percent G2 delay af
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Results 4.2.3.2 Effect of BPDE expo
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Results Fig. 29: Comparison of perc
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Results Fig. 31: Percent cell death
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Results normalization with baseline
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Results 4.2.5.2 Real time PCR valid
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Results homozygous wild-type, heter
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Results Fig. 36b: Electrophoresis o
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Results Fig. 37a: Representative el
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Results Table 13: Consolidated geno
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Results LCL Genes NAT2(1) NAT2(2) N
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Results Fig. 38: Distribution of Ge
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Results Fig. 39: Various combinatio
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Results Table 14: Genotype-phenotyp
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Discussion Introduction Squamous ce
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Discussion stimulated lymphocytes w
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Discussion H2AX is currently the mo
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Discussion or G2/M phase arrest. As
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Discussion differential expression
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Discussion DNA repair genes and MPN
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Chapter 6 Summary and Conclusions
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Summary and Conclusions Statistical
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Bibliography 1. Dikshit, R.; Gupta,
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Bibliography 43. Lei, D.; Sturgis,
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Bibliography 76. Fry, R. C.; Svenss
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Bibliography 115. Kote-Jarai, Z.; M
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Bibliography 149. Hashibe, M.; Bren
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Bibliography 183. Bergamaschi, D.;
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Bibliography 216. Bondy, M. L.; Wan
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Indian J Med Res 135, June 2012, pp
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822 INDIAN J MED RES, JUNE 2012 mar
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824 INDIAN J MED RES, JUNE 2012 (h)
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826 INDIAN J MED RES, JUNE 2012 Tab
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828 INDIAN J MED RES, JUNE 2012 lik
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CASE REPORT Eben L. Rosenthal, MD,
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FIGURE 2. Chromosomal breakage anal
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FA along with ataxia telangiectasia