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Becker, N. and I. Marschner (1990). The effect of heterogeneity on the spread of disease. in Stochastic processes in epidemic theory: proceedings of a conference held in Luminy, France, October 23-29, 1988. P. Picard, J. P. Gabriel and C. Lefevre, Eds. New York, Springer-Verlag. 86: 90-103. Begon, M., M. Bennett, R. G. Bowers, N. P. French, S. M. Hazel and J. Turner (2002). A clarification of transmission terms in host-microparasite models: numbers, densities and areas. Epidemiology and Infection 129: 147-153. Bjornstad, O. N., B. F. Finkenstadt and B. T. Grenfell (2002). Dynamics of measles epidemics: Estimating scaling of transmission rates using a Time series SIR model. Ecological Monographs 72: 169-184. Blanchard, J. F. (2002). Populations, pathogens, and epidemic phases: closing the gap between theory and practice in the prevention of sexually transmitted diseases. Sexually Transmitted Infections 78: I183-I188. Blower, S. M., H. B. Gershengorn and R. M. Grant (2000). A tale of two futures: HIV and antiretroviral therapy in San Francisco. Science 287: 650-654. Blower, S. M., T. C. Porco and G. Darby (1998). Predicting and preventing the emergence of antiviral drug resistance in HSV-2. Nature Medicine 4: 673-678. Booth, C. M., L. M. Matukas, G. A. Tomlinson, A. R. Rachlis, D. B. Rose, H. A. Dwosh, S. L. Walmsley, T. Mazzulli, M. Avendano, P. Derkach, I. E. Ephtimios, I. Kitai, B. D. Mederski, S. B. Shadowitz, W. L. Gold, L. A. Hawryluck, E. Rea, J. S. Chenkin, D. W. Cescon, S. M. Poutanen and A. S. Detsky (2003) Clinical features and short-term outcomes of 144 patients with SARS in the greater Toronto area. Journal of the American Medical Association 289: 1-9. Boots, M. and R. J. Knell (2002). The evolution of risky behaviour in the presence of a sexually transmitted disease. Proceedings of the Royal Society of London Series B-Biological Sciences 269: 585-589. Bowden, F. J. and G. P. Garnett (2000). Trichomonas vaginalis epidemiology: parameterising and analysing a model of treatment interventions. Sexually Transmitted Infections 76: 248-256. Carey, D. E., J. Casals, R. F. Addy, H. A. White, G. Stroh, A. Fom, L. Pinneo, Henderso.Be and G. E. Kemp (1972). Lassa Fever - Epidemiological Aspects of 1970 Epidemic, Jos, Nigeria. Transactions of the Royal Society of Tropical Medicine and Hygiene 66: 402-408. Castillo-Chavez, C. (1989). Mathematical and statistical approaches to AIDS epidemiology. Berlin, Springer-Verlag. 181
Caswell, H. (2001) Matrix Population Models, 2 nd ed. Sinauer, Sunderland MA. CDC (2002). Sexually Transmitted Disease Surveillance, 2001. Atlanta, GA, U.S Department of Health and Human Services. Chen, R. T., G. M. Goldbaum, S. G. F. Wassilak, L. E. Markowitz and W. A. Orenstein (1989). An Explosive Point-Source Measles Outbreak in a Highly Vaccinated Population - Modes of Transmission and Risk-Factors for Disease. American Journal of Epidemiology 129: 173-182. Chowell, G., C. Castillo-Chavez, P. W. Fenimore, C. M. Kribs-Zaleta, L. Arriola and J. M. Hyman (2004). Model parameters and outbreak control for SARS. Emerging Infectious Diseases 10: 1258-1263. Chowell, G., N. W. Hengartner, C. Castillo-Chavez, P. W. Fenimore and J. M. Hyman (2004). The basic reproductive number of Ebola and the effects of public health measures: the cases of Congo and Uganda. Journal of Theoretical Biology 229: 119-126. Christensen, P. E., H. Schmidt, H. O. Bang, V. Andersen, B. Jordal and O. Jensen (1953). An Epidemic of Measles in Southern Greenland, 1951 - Measles in Virgin Soil .2. The Epidemic Proper. Acta Medica Scandinavica 144: 430-449. Curtis, A. B., R. Ridzon, R. Vogel, S. McDonough, J. Hargreaves, J. Ferry, S. Valway and I. M. Onorato (1999). Extensive transmission of Mycobacterium tuberculosis from a child. New England Journal of Medicine 341: 1491-1495. Cyranoski, D. & A. Abbott (2003) Apartment complex holds clues to pandemic potential of SARS. Nature 423: 3-4. De Jong, M. C. M., O. Diekmann and J. A. P. Heesterbeek (1995). How does transmission of infection depend on population size? in Epidemic models: their structure and relation to data. D. Mollison, Ed., Cambridge University Press: 84-94. Dieckmann, U., J. A. J. Metz, M. W. Sabelis and K. Sigmund, Eds. (2002). Adaptive Dynamics of Infectious Diseases: In Pursuit of Virulence Management. Cambridge Series in Adaptive Dynamics. Cambridge, Cambridge University Press. Diekmann, O., K. Dietz and J. A. P. Heesterbeek (1991). The basic reproduction ratio for sexually-transmitted diseases 1. Theoretical considerations. Mathematical Biosciences 107: 325-339. Diekmann, O. and J. A. P. Heesterbeek (2000). Mathematical epidemiology of infectious diseases: model building, analysis, and interpretation. Chichester, Wiley. 182
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Disease transmission in heterogeneo
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Abstract Disease transmission in he
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variation is quantified from outbre
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ACKNOWLEDGEMENTS I’ve been fortun
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Engineering Research Council of Can
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Epidemic modelers face an essential
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casual contact (DCC), common usage
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HCW, and patient pools) and dynamic
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Hoffmann 2004; Shen et al. 2004)—
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Chapter Two Frequency-dependent inc
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principles and reach robust conclus
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partnership, disease and demographi
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transmission to incorporate this ph
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This result can be understood intui
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Garnett 2002). We simulated epidemi
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4. Infection-induced changes in pai
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susceptible population (Diekmann an
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epidemics, since they bring R0 clos
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equired.) For slower-moving, chroni
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addressed here. Our treatment consi
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Table 1. Results for epidemics with
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(Equations 3 and A4); the lighter l
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Figure 2 A) B) Total proportion inf
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Appendix Derivation of SI pair dens
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As described in Section 2, our goal
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can be calculated as the product of
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Chapter Three Curtailing transmissi
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egions with on-going epidemics has
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transmission to the general communi
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and Ih), as well as from off-duty t
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ours—see Diekmann & Heesterbeek (
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In all cases (Figure 2C, 2D), we id
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Sensitivity to quarantining rate (s
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precautions in the hospital (η→1
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Preventing generalized community tr
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everywhere. These robust conclusion
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increasingly significant contributi
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hospitals or wards. Future work on
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Table 1. Summary of transmission an
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formulation of our model allows for
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Figure 3 (A) Increase in cumulative
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Figure 1 74
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Figure 3 (A) (B) (C) Cumulative num
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Appendix Sensitivity to population
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symptomatic HCWs is low. Indeed, th
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E I I I I m, i m, 1 m, 2 m , 3 m ,
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for a stochastic epidemic: the prob
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progress through the age sub-compar
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We therefore wish to characterize t
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Figure S4 Distribution of (A) incub
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Figure S2 (A) (C) 92 (B) (D)
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Figure S4 (A) (B) Proportion of cas
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1. Introduction During the global e
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quantity p0, the proportion of case
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model selection techniques, lending
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elatively mild variation in ν, sho
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cannot make inferences based on the
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low k extinction happens within the
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measured by the variance-to-mean ra
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succeed (Figure 3B). For a given re
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to lower infectiousness. Other rele
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observations for the diseases exami
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Pneumonic plague 6 outbreaks N=74 A
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s surveillance data. 90% CI: Bootst
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Figure captions Figure 1 Evidence f
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Figure 4 Impact of control measures
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Figure 2 Other Measles Influenza Ru
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Figure 4 C Reproductive number, R 1
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epresenting transmission yields a g
Page 139 and 140: We rescaled the AICc by subtracting
Page 141 and 142: for which the median of bootstrap e
Page 143 and 144: transmission due to the most infect
Page 145 and 146: an integer Z (99) such that FPoisso
Page 147 and 148: fv(u). Demographic stochasticity in
Page 149 and 150: original process is eliminated with
Page 151 and 152: For RA control, with a random propo
Page 153 and 154: ∞ ( , ) ∫ ( ) ( ). k−1 −t w
Page 155 and 156: * and for ν < ν : ∞ ∫ ν C 1
Page 157 and 158: Contrib(control policy) = Pr(contai
Page 159 and 160: ange of the first disease generatio
Page 161 and 162: Figure S1 MLE estimates of k 10 1 0
Page 163 and 164: Figure S2 (cont) D E F k=inf k=4 k=
Page 165 and 166: Figure S4 Relative frequency 0.4 0.
Page 167 and 168: SARS (March 12) and the imposition
Page 169 and 170: Transmission was predominantly by i
Page 171 and 172: Monkeypox, Zaire 1980-1984 (Jezek e
Page 173 and 174: Rubella, Hawaii 1970 (Hattis et al.
Page 175 and 176: tracing, with the stated goal of de
Page 177 and 178: Table S1. Superspreading events in
Page 179 and 180: Measles 250 Dance party ?M First ar
Page 181 and 182: SARS 187+ Apartment block 26M Amoy
Page 183 and 184: SARS 33 Hospital 62W Undiagnosed: S
Page 185 and 186: SARS 24/2* Home, emergency room, IC
Page 187 and 188: Streptococcus group A (type 1) 100+
Page 189: References Abbot, P. and L. M. Dill
Page 193 and 194: Evatt, B. L., W. R. Dowdle, M. John
Page 195 and 196: Health Canada (2003) Summary of Sev
Page 197 and 198: Kretzschmar, M. (2000). Sexual netw
Page 199 and 200: McCallum, H., N. Barlow and J. Hone
Page 201 and 202: Taylor, H. M. and S. Karlin (1998).
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