genomewide characterization of host-pathogen interactions by ...
genomewide characterization of host-pathogen interactions by ...
genomewide characterization of host-pathogen interactions by ...
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Maren Depke<br />
Results<br />
Liver Gene Expression Pattern in a Mouse Psychological Stress Model<br />
molecule Nnmt was up-regulated selectively after repeated stress. To verify the biological<br />
relevance <strong>of</strong> an altered redox homeostasis, protein carbonylation was analyzed as a marker <strong>of</strong><br />
oxidative stress. Remarkably, increased protein carbonyl content <strong>of</strong> plasmatic and hepatic<br />
proteins was detectable already immediately after acute stress, indicating a rapid and significant<br />
protein damage <strong>by</strong> increased formation <strong>of</strong> reactive oxygen species (data not shown). After<br />
chronic psychological stress the protein-carbonyl content had returned to the level seen in nonstressed<br />
control mice (data not shown).<br />
Finally, the expression <strong>of</strong> Glrx (glutaredoxin) and Gsta (glutathione S-transferase) was<br />
significantly increased in the liver <strong>of</strong> chronically stressed mice indicating that compensatory antioxidative<br />
mechanisms were induced. This may explain why the carbonyl content <strong>of</strong> proteins in<br />
plasma and liver in repeatedly stressed mice had declined to the normal level observed in nonstressed<br />
control mice (data not shown).<br />
Repeated stress-induced apoptosis in the liver<br />
Several genes that were regulated in the liver <strong>of</strong> repeatedly stressed mice provided hints for<br />
increased cell death. By comparing the mRNA pr<strong>of</strong>ile <strong>of</strong> liver homogenates <strong>of</strong> acutely and<br />
repeatedly stressed mice a highly similar pattern <strong>of</strong> altered gene expression <strong>of</strong> cell cycle and<br />
apoptosis-related genes was observed. In both acutely and chronically stressed animals,<br />
increased mRNA levels compared to non-stressed controls were detected for Tnfrsf1b, Cdkn1a,<br />
Cebpb, Igfbp1, and Gadd45b (Fig. R.1.8 A). Other genes, such as Fos and Jun, which were induced<br />
immediately after acute stress exposure, did not reveal prolonged high mRNA expression<br />
(Fig. R.1.8 A, B), whereas yet another group, including Ccnd1 and Xbp1, were selectively<br />
repressed after the ninth stress session (Fig. R.1.8 B). Using TUNEL techniques, induction <strong>of</strong><br />
hepatocyte apoptosis was not detectable immediately after one single acute stress exposure<br />
(Fig. R.1.8 D), but high numbers <strong>of</strong> dead cells in livers after repeated stress exposure (Fig. R.1.8 E)<br />
compared with control mice (Fig. R.1.8 C) were documented. However, the liver mass after the<br />
ninth stress session was only slightly decreased compared to non-stressed control animals<br />
(Fig. R.1.8 F). This may be caused <strong>by</strong> induction <strong>of</strong> repair processes for which heightened hepatic<br />
expression <strong>of</strong> IL-6 receptor and Ptp4a1 after chronic stress are indications.<br />
Fig. R.1.8. Differential regulation <strong>of</strong> cell death associated genes in liver <strong>of</strong> stressed mice.<br />
Genes resulting from a search for “apoptosis AND liver”, “apoptosis AND hepatocyte”, “cell death AND liver” and “cell death AND<br />
hepatocyte” using Ingenuity Pathway Analysis (IPA, Ingenuity Systems, www.ingenuity.com) were collected in a list. All genes <strong>of</strong> this<br />
list which displayed differential regulation in liver after acute and/or chronic stress exposure were added to a new user-defined<br />
pathway as analysis nodes and <strong>interactions</strong> between these selected genes were drawn using the “Connect” tool <strong>of</strong> IPA. Edge lines that<br />
are continuous represent direct <strong>interactions</strong>, whereas broken lines indicate indirect influences. The pathway was overlaid with<br />
expression data from (A) acute stress and from (B) chronic stress. Red indicates increased and green decreased expression after stress<br />
exposure compared with the control. Intensity <strong>of</strong> the node color represents the degree <strong>of</strong> up (red) and down (green) regulation in the<br />
stressed livers. Different shapes <strong>of</strong> the nodes indicate the functional classes <strong>of</strong> the gene products (e. g. vertical<br />
ellipse − transmembrane receptor; horizontal ellipse − transcription regulator; vertical rectangle − G-protein coupled receptor;<br />
horizontal rectangle − ligand-dependent nuclear receptor; trapezium − transporter; triangle − phosphatase; inverted triangle − kinase;<br />
vertical rhomb − enzyme; horizontal rhomb − peptidase; quadrat − cytokine; double lined circle − group or complex; single lined<br />
circle − other).<br />
The level <strong>of</strong> apoptosis TUNEL assay (x400): compared to the control (C), livers <strong>of</strong> mice exposed to acute stress did no display any<br />
significant increase in the level <strong>of</strong> apoptosis (D). However, high numbers <strong>of</strong> apoptotic hepatocytes were detected in repeatedly<br />
stressed mice (E). Each picture is representative for n = 9 mice/group. Increased apoptosis did not alter liver mass (F), even after the<br />
9th stress cycle (black box plots) compared with non-stressed mice (white box plots) n = 9 mice/group; data representative for least 2<br />
independent experiments.<br />
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