genomewide characterization of host-pathogen interactions by ...
genomewide characterization of host-pathogen interactions by ... genomewide characterization of host-pathogen interactions by ...
Maren Depke References Demling R. The use of anabolic agents in catabolic states. J Burns Wounds. 2007 Feb 12;6:e2. Deora R, Misra TK. Purification and characterization of DNA dependent RNA polymerase from Staphylococcus aureus. Biochem Biophys Res Commun. 1995 Mar 17;208(2):610-6. Depke M, Fusch G, Domanska G, Geffers R, Völker U, Schuett C, Kiank C. Hypermetabolic syndrome as a consequence of repeated psychological stress in mice. Endocrinology. 2008 Jun; 149(6):2714-23. Epub 2008 Mar 6. Depke M, Steil L, Domanska G, Völker U, Schütt C, Kiank C. Altered hepatic mRNA expression of immune response and apoptosis-associated genes after acute and chronic psychological stress in mice. Mol Immunol. 2009 Sep;46(15):3018-28. Epub 2009 Jul 9. Deurenberg RH, Stobberingh EE. The evolution of Staphylococcus aureus. Infect Genet Evol. 2008 Dec;8(6):747-63. Epub 2008 Jul 29. Diekema DJ, Pfaller MA, Schmitz FJ, Smayevsky J, Bell J, Jones RN, Beach M; SENTRY Partcipants Group. Survey of infections due to Staphylococcus species: frequency of occurrence and antimicrobial susceptibility of isolates collected in the United States, Canada, Latin America, Europe, and the Western Pacific region for the SENTRY Antimicrobial Surveillance Program, 1997-1999. Clin Infect Dis. 2001 May 15;32 Suppl 2:S114-32. Dietrich CG, Geier A, Oude Elferink RP. ABC of oral bioavailability: transporters as gatekeepers in the gut. Gut. 2003 Dec;52(12):1788-95. Döffinger R, Dupuis S, Picard C, Fieschi C, Feinberg J, Barcenas-Morales G, Casanova JL. Inherited disorders of IL-12- and IFNγ-mediated immunity: a molecular genetics update. Mol Immunol. 2002 May; 38(12-13):903-9. Dougall WC, Nick HS. Manganese superoxide dismutase: a hepatic acute phase protein regulated by interleukin-6 and glucocorticoids. Endocrinology. 1991 Nov;129(5):2376-84. Dubrac S, Boneca IG, Poupel O, Msadek T. New insights into the WalK/WalR (YycG/YycF) essential signal transduction pathway reveal a major role in controlling cell wall metabolism and biofilm formation in Staphylococcus aureus. J Bacteriol. 2007 Nov;189(22): 8257-69. Epub 2007 Sep 7. Duchateau PN, Pullinger CR, Orellana RE, Kunitake ST, Naya-Vigne J, O'Connor PM, Malloy MJ, Kane JP. Apolipoprotein L, a new human high density lipoprotein apolipoprotein expressed by the pancreas. Identification, cloning, characterization, and plasma distribution of apolipoprotein L. J Biol Chem. 1997 Oct 10;272(41):25576-82. Duffield JS. The inflammatory macrophage: a story of Jekyll and Hyde. Clin Sci (Lond). 2003 Jan;104(1):27-38. Dunkelberger JR, Song WC. Complement and its role in innate and adaptive immune responses. Cell Res. 2010 Jan;20(1):34-50. Epub 2009 Dec 15. Dziewanowska K, Patti JM, Deobald CF, Bayles KW, Trumble WR, Bohach GA. Fibronectin binding protein and host cell tyrosine kinase are required for internalization of Staphylococcus aureus by epithelial cells. Infect Immun. 1999 Sep;67(9):4673-8. Dziewanowska K, Carson AR, Patti JM, Deobald CF, Bayles KW, Bohach GA. Staphylococcal fibronectin binding protein interacts with heat shock protein 60 and integrins: role in internalization by epithelial cells. Infect Immun. 2000 Nov;68(11):6321-8. Ehrt S, Schnappinger D, Bekiranov S, Drenkow J, Shi S, Gingeras TR, Gaasterland T, Schoolnik G, Nathan C. Reprogramming of the macrophage transcriptome in response to interferon-γ and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase. J Exp Med. 2001 Oct 15;194(8):1123-40. Elenkov IJ. Glucocorticoids and the Th1/Th2 balance. Ann N Y Acad Sci. 2004 Jun;1024:138-46. Emonts M, de Jongh CE, Houwing-Duistermaat JJ, van Leeuwen WB, de Groot R, Verbrugh HA, Hermans PW, van Belkum A. Association between nasal carriage of Staphylococcus aureus and the human complement cascade activator serine protease C1 inhibitor (C1INH) valine vs. methionine polymorphism at amino acid position 480. FEMS Immunol Med Microbiol. 2007 Aug;50(3):330-2. Epub 2007 May 10. 212
Maren Depke References Eriksen NH, Espersen F, Rosdahl VT, Jensen K. Carriage of Staphylococcus aureus among 104 healthy persons during a 19-month period. Epidemiol Infect. 1995 Aug;115(1):51-60. Ermak G, Davies KJ. Calcium and oxidative stress: from cell signaling to cell death. Mol Immunol. 2002 Feb;38(10):713-21. Erwig LP, Kluth DC, Walsh GM, Rees AJ. Initial cytokine exposure determines function of macrophages and renders them unresponsive to other cytokines. J Immunol. 1998 Aug 15;161(4):1983-8. Eske K, Breitbach K, Köhler J, Wongprompitak P, Steinmetz I. Generation of murine bone marrow derived macrophages in a standardised serum-free cell culture system. J Immunol Methods. 2009 Mar 15;342(1-2):13-9. Epub 2009 Jan 6. Esmon CT. Inflammation and the activated protein C anticoagulant pathway. Semin Thromb Hemost. 2006 Apr;32 Suppl 1:49- 60. Eto A, Muta T, Yamazaki S, Takeshige K. Essential roles for NF-κB and a Toll/IL-1 receptor domain-specific signal(s) in the induction of IκB-ζ. Biochem Biophys Res Commun. 2003 Feb 7;301(2):495-501. Everson CA, Reed HL. Pituitary and peripheral thyroid hormone responses to thyrotropin-releasing hormone during sustained sleep deprivation in freely moving rats. Endocrinology. 1995 Apr;136(4):1426-34. Farber JM. A macrophage mRNA selectively induced by γ-interferon encodes a member of the platelet factor 4 family of cytokines. Proc Natl Acad Sci U S A. 1990 Jul;87(14):5238-42. Fausto N, Campbell JS, Riehle KJ. Liver regeneration. Hepatology. 2006 Feb;43(2 Suppl 1):S45-53. Favorova OO, Zargarova TA, Rukosuyev VS, Beresten SF, Kisselev LL. Molecular and cellular studies of tryptophanyl-tRNA synthetases using monoclonal antibodies. Remarkable variations in the content of tryptophanyl-tRNA synthetase in the pancreas of different mammals. Eur J Biochem. 1989 Oct 1;184(3):583-8. Feezor RJ, Oberholzer C, Baker HV, Novick D, Rubinstein M, Moldawer LL, Pribble J, Souza S, Dinarello CA, Ertel W, Oberholzer A. Molecular characterization of the acute inflammatory response to infections with Gram-negative versus Grampositive bacteria. Infect Immun. 2003 Oct;71(10):5803-13. Finck BN, Kelley KW, Dantzer R, Johnson RW. In vivo and in vitro evidence for the involvement of tumor necrosis factor-α in the induction of leptin by lipopolysaccharide. Endocrinology. 1998 May;139(5):2278-83. Finck BN, Johnson RW. Tumor necrosis factor (TNF)-α induces leptin production through the p55 TNF receptor. Am J Physiol Regul Integr Comp Physiol. 2000 Feb;278(2):R537-43. Finlay BB, Cossart P. Exploitation of mammalian host cell functions by bacterial pathogens. Science. 1997 May 2;276(5313):718-25. Fitzpatrick F, Humphreys H, O'Gara JP. The genetics of staphylococcal biofilm formation – will a greater understanding of pathogenesis lead to better management of device-related infection? Clin Microbiol Infect. 2005 Dec;11(12):967-73. Fleckner J, Rasmussen HH, Justesen J. Human interferon gamma potently induces the synthesis of a 55-kDa protein (gamma 2) highly homologous to rabbit peptide chain release factor and bovine tryptophanyl-tRNA synthetase. Proc Natl Acad Sci U S A. 1991 Dec 15; 88(24):11520-4. Fletcher JI, Huang DC. BH3-only proteins: orchestrating cell death. Cell Death Differ. 2006 Aug;13(8):1268-71. Epub 2006 Jun 9. Fleury C, Neverova M, Collins S, Raimbault S, Champigny O, Levi-Meyrueis C, Bouillaud F, Seldin MF, Surwit RS, Ricquier D, Warden CH. Uncoupling protein-2: a novel gene linked to obesity and hyperinsulinemia. Nat Genet. 1997 Mar;15(3):269-72. 213
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Maren Depke<br />
References<br />
Eriksen NH, Espersen F, Rosdahl VT, Jensen K.<br />
Carriage <strong>of</strong> Staphylococcus aureus among 104 healthy persons during a 19-month period. Epidemiol Infect. 1995<br />
Aug;115(1):51-60.<br />
Ermak G, Davies KJ.<br />
Calcium and oxidative stress: from cell signaling to cell death. Mol Immunol. 2002 Feb;38(10):713-21.<br />
Erwig LP, Kluth DC, Walsh GM, Rees AJ.<br />
Initial cytokine exposure determines function <strong>of</strong> macrophages and renders them unresponsive to other cytokines.<br />
J Immunol. 1998 Aug 15;161(4):1983-8.<br />
Eske K, Breitbach K, Köhler J, Wongprompitak P, Steinmetz I.<br />
Generation <strong>of</strong> murine bone marrow derived macrophages in a standardised serum-free cell culture system.<br />
J Immunol Methods. 2009 Mar 15;342(1-2):13-9. Epub 2009 Jan 6.<br />
Esmon CT.<br />
Inflammation and the activated protein C anticoagulant pathway. Semin Thromb Hemost. 2006 Apr;32 Suppl 1:49-<br />
60.<br />
Eto A, Muta T, Yamazaki S, Takeshige K.<br />
Essential roles for NF-κB and a Toll/IL-1 receptor domain-specific signal(s) in the induction <strong>of</strong> IκB-ζ. Biochem Biophys<br />
Res Commun. 2003 Feb 7;301(2):495-501.<br />
Everson CA, Reed HL.<br />
Pituitary and peripheral thyroid hormone responses to thyrotropin-releasing hormone during sustained sleep<br />
deprivation in freely moving rats. Endocrinology. 1995 Apr;136(4):1426-34.<br />
Farber JM.<br />
A macrophage mRNA selectively induced <strong>by</strong> γ-interferon encodes a member <strong>of</strong> the platelet factor 4 family <strong>of</strong><br />
cytokines. Proc Natl Acad Sci U S A. 1990 Jul;87(14):5238-42.<br />
Fausto N, Campbell JS, Riehle KJ.<br />
Liver regeneration. Hepatology. 2006 Feb;43(2 Suppl 1):S45-53.<br />
Favorova OO, Zargarova TA, Rukosuyev VS, Beresten SF, Kisselev LL.<br />
Molecular and cellular studies <strong>of</strong> tryptophanyl-tRNA synthetases using monoclonal antibodies. Remarkable<br />
variations in the content <strong>of</strong> tryptophanyl-tRNA synthetase in the pancreas <strong>of</strong> different mammals. Eur J Biochem.<br />
1989 Oct 1;184(3):583-8.<br />
Feezor RJ, Oberholzer C, Baker HV, Novick D, Rubinstein M, Moldawer LL, Pribble J, Souza S, Dinarello CA, Ertel W,<br />
Oberholzer A.<br />
Molecular <strong>characterization</strong> <strong>of</strong> the acute inflammatory response to infections with Gram-negative versus Grampositive<br />
bacteria. Infect Immun. 2003 Oct;71(10):5803-13.<br />
Finck BN, Kelley KW, Dantzer R, Johnson RW.<br />
In vivo and in vitro evidence for the involvement <strong>of</strong> tumor necrosis factor-α in the induction <strong>of</strong> leptin <strong>by</strong><br />
lipopolysaccharide. Endocrinology. 1998 May;139(5):2278-83.<br />
Finck BN, Johnson RW.<br />
Tumor necrosis factor (TNF)-α induces leptin production through the p55 TNF receptor. Am J Physiol Regul Integr<br />
Comp Physiol. 2000 Feb;278(2):R537-43.<br />
Finlay BB, Cossart P.<br />
Exploitation <strong>of</strong> mammalian <strong>host</strong> cell functions <strong>by</strong> bacterial <strong>pathogen</strong>s. Science. 1997 May 2;276(5313):718-25.<br />
Fitzpatrick F, Humphreys H, O'Gara JP.<br />
The genetics <strong>of</strong> staphylococcal bi<strong>of</strong>ilm formation – will a greater understanding <strong>of</strong> <strong>pathogen</strong>esis lead to better<br />
management <strong>of</strong> device-related infection? Clin Microbiol Infect. 2005 Dec;11(12):967-73.<br />
Fleckner J, Rasmussen HH, Justesen J.<br />
Human interferon gamma potently induces the synthesis <strong>of</strong> a 55-kDa protein (gamma 2) highly homologous to<br />
rabbit peptide chain release factor and bovine tryptophanyl-tRNA synthetase. Proc Natl Acad Sci U S A. 1991 Dec 15;<br />
88(24):11520-4.<br />
Fletcher JI, Huang DC.<br />
BH3-only proteins: orchestrating cell death. Cell Death Differ. 2006 Aug;13(8):1268-71. Epub 2006 Jun 9.<br />
Fleury C, Neverova M, Collins S, Raimbault S, Champigny O, Levi-Meyrueis C, Bouillaud F, Seldin MF, Surwit RS,<br />
Ricquier D, Warden CH.<br />
Uncoupling protein-2: a novel gene linked to obesity and hyperinsulinemia. Nat Genet. 1997 Mar;15(3):269-72.<br />
213