genomewide characterization of host-pathogen interactions by ...
genomewide characterization of host-pathogen interactions by ... genomewide characterization of host-pathogen interactions by ...
Maren Depke Discussion and Conclusions al. 1995, Crosse et al. 2000, Anderson KL et al. 2006, Wolz et al. 2010). In a comparison between the stationary phase gene expression profile and that of the late serum/CO 2 control (each in relation to exponential phase growth) a high overlap was recognized. This included reduced expression of ribosomal protein genes, tRNA synthetase genes, translation elongation factor genes and a clear trend of induction of the stringent response regulator relA as it was reported in literature (Anderson KL et al. 2006). Thus, the gene expression in the late serum/CO 2 controls resembled the stationary phase/stringent response. A corresponding similarity was not observed for the internalized staphylococci as well as for the early control samples. In conclusion from these observations, it was decided that the 1 h serum/CO 2 control sample, although not timematched, was the most appropriate baseline sample for this infection experiment study. Since the shift of bacterial cells from aerobic agitated culture to infection settings in cell culture plates and 5 % CO 2 atmosphere probably resulted in a change of oxygen availability, genes harboring binding sites for Rex, the central anaerobiosis regulator and transcriptional repressor (Pagels et al. 2010), were analyzed to elucidate whether the changes of oxygen availability lead to an anaerobiosis gene expression signature (this study). De-repression of Rex-binding site containing genes was visible during anaerobic incubation, but despite the shift from agitated culture to cell culture plate, internalized samples did not show the same pattern of anaerobic gene expression. Contrarily, many of these Rex binding sites containing genes, which were in trend or significantly induced in anaerobically incubated samples (indicating de-repression after Rex lost its DNA affinity in anaerobic conditions), were in trend or significantly repressed in internalized staphylococci in S9 cells (indicating sustained DNA binding activity of Rex). Thus, it was concluded that internalized staphylococci did not suffer from reduced oxygen availability. One of the first observations during the analysis of the internalized staphylococcal gene expression pattern was that the response regulator gene saeR of the two-component system SaeRS was induced in internalized staphylococci 6.5 h after start of infection and that the sensor component gene saeS was significantly differentially expressed but only did not exceed a fold change of 2. This observation led to a more detailed analysis of the SaeRS regulon in internalized staphylococci. In 2006, Rogasch and coworkers published a transcriptomic and proteomic characterization study of the SaeRS regulon (Rogasch et al. 2006). Of the genes defined to be regulated in that publication, 21 were found to be regulated (mostly increased) in at least one of the two analyzed time points of internalized staphylococci in the study described in this thesis. These included the auto-induced saeR, adhesins, serine protease, toxins, immune-evasive genes and others. Thus, most probably the SaeRS two-component system was activated in internalized staphylococci. The SaeRS system was furthermore studied by DNA array analysis using a saeS gene replacement mutant (Sa371ko) and its parental strain, the clinical isolate S. aureus WCUH29 (Liang et al. 2006). Less than 20 genes (positive influence on coa, fnbB, fnb, efb, hla, hlb, hlgC, saeS, SA1000, which corresponds to SAOUHSC_01110, and others; negative influence on agrA and a gene coding for a hypothetical protein) were observed to be SaeRS dependently regulated. In vivo, the saeS mutant strain resulted in less bacterial load in the kidney compared to the wild type strain in a hematogenous pyelonephritis model of i. v. infected mice (Liang et al. 2006). Interestingly, S. aureus deficient for SaeS exhibited less adhesion to and less invasion in human lung epithelial A549 cells and resulted in a reduced rate of host cell apoptosis which was possibly mediated in parts by reduced expression of hla (Liang et al. 2006). Furthermore, negative influence on adhesion and internalization was documented for efb and SA1000 replacement 198
Maren Depke Discussion and Conclusions mutants. Thus, especially saeRS as regulatory system, but also efb and SA1000 (SAOUHSC_01110) contribute to adhesion and invasion (Liang et al. 2006). Strikingly, these genes were observed to be induced (saeR, efb) or in trend induced (saeS; SAOUHSC_01110; data not shown for SAOUHSC_01110) in internalized staphylococci in the study described in this thesis. Furthermore, also coa, fnbB, hla, and hlgC, determined as SaeRS-dependent by Liang and colleagues, were induced in internalized staphylococci in this study. The final conclusion of Liang et al. stated that “activation of the SaeRS system is required for S. aureus to adhere to and invade epithelial cells”. Supportingly, such activation was also concluded in this study. Nevertheless, the activation SaeRS and induction of saeRS might depend on further experimental aspects which are not defined yet. Infection and gene expression studies by Garzoni and coworkers did not reveal induction but repression of saeR and saeS in S. aureus 6850 upon internalization in human lung epithelial A549 cells (Garzoni et al. 2007). Contrarily, upon phagocytosis by human polymorphonuclear leukocytes the induction of saeR and saeS was observed in different S. aureus strains (Voyich et al. 2005). While adherence of sae mutant and wild type to endothelial cells did not differ, the mutant was less invasive than the wild type (Steinhuber et al. 2003). Further affirmation of the participation of saeS in infection models was derived from mutagenesis studies in combination with murine systemic infection. Here, non-functional saeS led to attenuated virulence (Benton et al. 2004). A different bacterial strain background led to similar observations of reduced virulence in mice (Rampone et al. 1996). Also Goerke et al. identified SaeRS as important regulator which is active in vivo, although the deletion mutant did not yield different bacterial densities compared to the wild type in a device-related infection model (Goerke et al. 2005). Besides the already mentioned saeR and saeS, three other regulators were observed with differential expression in internalized staphylococci (sarT, sarU, rot). Since sarT and sarU are less well characterized and since all these three genes were repressed, the effect of this differential expression cannot easily be rated in the setting of the in vitro infection model. Fittingly to the concluded activity of the SaeRS system in internalized staphylococci, membrane-bound adhesins, which are partly known to be regulated by SaeRS (Liang et al. 2006), were induced (fnbA, fnbB, clfA, clfB). Fibronectin binding proteins (FnBPs) are – together with other surface proteins – important mediators of bacterial adhesion to host cells. They exhibit an even more central position for internalization processes. FnBPs were partly required for adhesion and mainly required for internalization into the bovine mammary gland epithelial cell line, MAC-T (Dziewanowska et al. 1999). The mechanism includes binding of FnBP to β 1 integrins via a bridge formed by fibronectin, but also direct binding of FnBP to host membrane-located Hsp60 (Dziewanowska et al. 2000). Anyway, another study demonstrated variability of fnb genes between different clinical isolates as well as variation in the ability to adhere to fibronectin by the different isolates. Strains which were derived from orthopaedic implant-associated infection showed higher adherence than the other isolates. Community-acquired invasive disease isolates harbored more often two fnb genes than carriage isolates, but the number of fnb genes correlated only to a low extent with the adhesion capacity (Peacock et al. 2000). Fibronectin-binding protein deficiency reduced the colonization of heart tissue in a rat endocarditis model indicating a role of FnBP in heart valve infection. Other tissue samples did not show the same effect (Kuypers/Proctor 1989). In order to avoid compensation of a deleted gene by other, functionally redundant staphylococcal genes, an overexpression study of clfA and fnbA 199
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- Page 218 and 219: Maren Depke References Jin T, Bokar
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- Page 222 and 223: Maren Depke References Luster AD, U
- Page 224 and 225: Maren Depke References Namiki S, Na
- Page 226 and 227: Maren Depke References Puccetti P.
- Page 228 and 229: Maren Depke References Siewert E, B
- Page 230 and 231: Maren Depke References van den Akke
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Maren Depke<br />
Discussion and Conclusions<br />
mutants. Thus, especially saeRS as regulatory system, but also efb and SA1000 (SAOUHSC_01110)<br />
contribute to adhesion and invasion (Liang et al. 2006). Strikingly, these genes were observed to<br />
be induced (saeR, efb) or in trend induced (saeS; SAOUHSC_01110; data not shown for<br />
SAOUHSC_01110) in internalized staphylococci in the study described in this thesis. Furthermore,<br />
also coa, fnbB, hla, and hlgC, determined as SaeRS-dependent <strong>by</strong> Liang and colleagues, were<br />
induced in internalized staphylococci in this study. The final conclusion <strong>of</strong> Liang et al. stated that<br />
“activation <strong>of</strong> the SaeRS system is required for S. aureus to adhere to and invade epithelial cells”.<br />
Supportingly, such activation was also concluded in this study.<br />
Nevertheless, the activation SaeRS and induction <strong>of</strong> saeRS might depend on further<br />
experimental aspects which are not defined yet. Infection and gene expression studies <strong>by</strong> Garzoni<br />
and coworkers did not reveal induction but repression <strong>of</strong> saeR and saeS in S. aureus 6850 upon<br />
internalization in human lung epithelial A549 cells (Garzoni et al. 2007). Contrarily, upon<br />
phagocytosis <strong>by</strong> human polymorphonuclear leukocytes the induction <strong>of</strong> saeR and saeS was<br />
observed in different S. aureus strains (Voyich et al. 2005).<br />
While adherence <strong>of</strong> sae mutant and wild type to endothelial cells did not differ, the mutant<br />
was less invasive than the wild type (Steinhuber et al. 2003). Further affirmation <strong>of</strong> the<br />
participation <strong>of</strong> saeS in infection models was derived from mutagenesis studies in combination<br />
with murine systemic infection. Here, non-functional saeS led to attenuated virulence (Benton et<br />
al. 2004). A different bacterial strain background led to similar observations <strong>of</strong> reduced virulence<br />
in mice (Rampone et al. 1996). Also Goerke et al. identified SaeRS as important regulator which is<br />
active in vivo, although the deletion mutant did not yield different bacterial densities compared<br />
to the wild type in a device-related infection model (Goerke et al. 2005).<br />
Besides the already mentioned saeR and saeS, three other regulators were observed with<br />
differential expression in internalized staphylococci (sarT, sarU, rot). Since sarT and sarU are less<br />
well characterized and since all these three genes were repressed, the effect <strong>of</strong> this differential<br />
expression cannot easily be rated in the setting <strong>of</strong> the in vitro infection model.<br />
Fittingly to the concluded activity <strong>of</strong> the SaeRS system in internalized staphylococci,<br />
membrane-bound adhesins, which are partly known to be regulated <strong>by</strong> SaeRS (Liang et al. 2006),<br />
were induced (fnbA, fnbB, clfA, clfB).<br />
Fibronectin binding proteins (FnBPs) are – together with other surface proteins – important<br />
mediators <strong>of</strong> bacterial adhesion to <strong>host</strong> cells. They exhibit an even more central position for<br />
internalization processes. FnBPs were partly required for adhesion and mainly required for<br />
internalization into the bovine mammary gland epithelial cell line, MAC-T (Dziewanowska et al.<br />
1999). The mechanism includes binding <strong>of</strong> FnBP to β 1 integrins via a bridge formed <strong>by</strong> fibronectin,<br />
but also direct binding <strong>of</strong> FnBP to <strong>host</strong> membrane-located Hsp60 (Dziewanowska et al. 2000).<br />
Anyway, another study demonstrated variability <strong>of</strong> fnb genes between different clinical isolates<br />
as well as variation in the ability to adhere to fibronectin <strong>by</strong> the different isolates. Strains which<br />
were derived from orthopaedic implant-associated infection showed higher adherence than the<br />
other isolates. Community-acquired invasive disease isolates harbored more <strong>of</strong>ten two fnb genes<br />
than carriage isolates, but the number <strong>of</strong> fnb genes correlated only to a low extent with the<br />
adhesion capacity (Peacock et al. 2000).<br />
Fibronectin-binding protein deficiency reduced the colonization <strong>of</strong> heart tissue in a rat<br />
endocarditis model indicating a role <strong>of</strong> FnBP in heart valve infection. Other tissue samples did not<br />
show the same effect (Kuypers/Proctor 1989). In order to avoid compensation <strong>of</strong> a deleted gene<br />
<strong>by</strong> other, functionally redundant staphylococcal genes, an overexpression study <strong>of</strong> clfA and fnbA<br />
199