Aquatic Environment and Biodiversity Annual Review 2012

Aquatic Environment and Biodiversity Annual Review 2012 Aquatic Environment and Biodiversity Annual Review 2012

25.10.2013 Views

AEBAR 2012: Marine Biodiversity taxa were orders of magnitude higher on the continental shelf than on the slope or abyss plain, and shelf, slope, and abyssal samples were distinct from each other in multivariate analyses. Diversity, however, was comparable between shelf and abyssal sites and lowest on the slope. Bacterial diversity was highest in abyssal and slope samples, but abundance, biomass, production, and activity of all enzymes except proteinase, which was highest in the abyss, were significantly higher in shelf samples. Benthic mega-epifaunal community composition was more strongly correlated with depth and seabed current speed than either water column productivity or seasonal ice cover, indicating that local hydrodynamics and their influence on advection of primary production are more important in determining distributions across the shelf than are local variations in production. Fauna on the seamounts were distinct from all other samples and were comprised of both Antarctic and Southern Ocean species, including remarkable populations of a new hyocrinid species on Admiralty seamount (Bowden et al. 2011, Eléaume et al. 2011). Published research to date has provided new insights into the distributions of several taxonomic groups (Lörz et al. 2009) , raised questions about the history of the northern seamount fauna over evolutionary time (Bowden et al. 2011), and contributed to a meta-analysis of the relationship between productivity and diversity in the deep sea (Leduc et al. 2012). In combination with molecular phylogenies and existing data from around Antarctica, results from this project represent a major contribution to knowledge of the Antarctic marine ecosystem. Specific Objective 10: To describe trophic/ecosystem relationships in the Ross Sea ecosystem (pelagic and benthic, fish and invertebrates). Progress has been made on obtaining data from which to elucidate trophic relationships between organisms in the Ross Sector of Antarctica collected on the IPY-CAML survey in February–March 2008. Two methods have been used. First, 1081 stomachs from 22 species of Antarctic fish were examined and the contents of the full or partially-full stomachs (comprising 776 fish) were identified to 68 prey codes. Index of Relative Importance (IRI) has been calculated from these data and diet overlap between fish species is presented. Second, stable isotope and elemental composition analysis of samples were carried out for carbon and nitrogen. In total, nearly 2000 samples were analysed. Samples include: • Fish (N=662 muscle, N=377 liver samples, 22 species); • Cephalopods (N=193); • Pelagic invertebrates (N=407); • Benthic sediments (N=36); • Phytoplankton (N=92); • Benthic invertebrates (N=200 completed, 95 pending analysis); Results have already been used to assist in parameterising and validating the quantitative model of the food web of the Ross Sea (paper accepted by CCAMLR Science). Research on the shrinkage of Antarctic silverfish carried out as part of this objective has contributed to a paper presented to the Ministry of Fisheries Antarctic Fisheries Working Group and accepted for submission to the CCAMLR working group on fisheries assessment in September 2010 (Pinkerton et al. 2007, 2009a, 2009b). Specific Objective 11: Assess molecular taxonomy and population genetics of selected Antarctic fauna and flora to estimate evolutionary divergence within and among ocean basins in circumpolar species. Provide DNA barcoding for all fish and multi-cellular invertebrate species by sequencing reference specimens in conjunction with Canadian Barcoding Centre, for specimen identification in gut content, plankton, and in taxonomic and population genetic projects. DNA data sets generated for selected Ross Sea taxa were combined with parallel data sets generated by other Institutes in order to estimate divergence within and among regions in the Southern Ocean. High levels of divergence, indicative of cryptic speciation, were found in all 279

AEBAR 2012: Marine Biodiversity major groups tested to date. Fishes: DNA sequencing of the COI gene revealed four well supported clades among the three recognized species of Macrourus in the Southern Ocean, indicating the presence of an undescribed species (Smith et al. 2011). A conclusion subsequently supported by meristic and morphometric examination of specimens with the description of a new species by McMillan et al. (2012). DNA barcodes also showed high sequence divergence among specimens of the slender codling Halargyreus johnsonii from New Zealand and the Southern Ocean, indicative of a cryptic species in this cosmopolitan species (Smith et al. 2011). A study of snailfishes collected during the IPY survey and from the toothfish fishery showed high species diversity with more than 34 Ross Sea liparid species in three genera; 18 of them new to science divergence (Stein 2012). Invertebrates: A combined NZ-BAS data set on the octopod genus Pareledone provided one of the largest barcoding studies on a Southern Ocean genus. Ross Sea specimens provisionally identified as Pareledone aequipapillae appeared in a discrete clade to specimens from the Antarctic Peninsula, with a barrier to gene flow to the west of the Antarctic Peninsula (Allcock et al. 2010). Large numbers of echinoderms have been tissue sampled and sequenced for COI and include the Asteroidea, Ophiuroidea, Echinoidea, Holothuroidea, and the crinoids (Dettai et al. in press). In the Ophiuroidea two dominant patterns emerged: a. widely distributed species showing shallow divergence by location and b. species with deeper divergence associated with location or depth, that represent cryptic species. A similar pattern emerged in the smaller set of Asteroid sequences, with deep divergences within some Ross Sea taxa. Preliminary results for the amphipod genus Rhacotropis showed 5 well supported clades, indicative of cryptic taxa; while for the genus Epimeria (27 specimens from the Ross Sea) there were two well supported clades for specimens identified as Epimeria robusta, and likewise for specimens identified as E. schiaparelli, indicative of cryptic taxa (Lörz 2009, 2010, Lörz et al. in press). These taxa show shallow morphological differences. IPY2007-02 NZ IPY-CAML Cephalopoda. This project will report on the diversity of Antarctic Cephalopoda (Octopus and Squid), including a complete inventory of taxa, and reports on ontogenetic and sexual variation in species, their systematics, diversity, distribution, life histories, and trophic importance. A MAppSc thesis has been completed as part of this project (Garcia 2010). Other research relevant or specifically linked to the projects above, are listed in Table 11.8. Table 11.8: Other research linked to MPI Ross Sea Antarctica biodiversity programme. MPI ANT2011-01 Stock modelling, fishery effects and ecosystems of the Ross Sea MBIE C01X1001 Protecting Ross Sea Ecosystems. Comparative distribution and ecology of Macrourus caml and M. whitsoni in the Ross Sea region; feeding relationships of fish species in the Ross Sea region; Spatial processes, including spatial marine protection; Ecosystem modelling of the Ross Sea region).(Pinkerton et al. 2012a,b; Murphy et al. 2012) DOC Leigh Torres NIWA/Alison OTHER Universities NIWA;Lincoln, Canterbury, Otago, Auckland, Waikato EMERGING ISSUES Coastal research and functional ecology-ongoing need Taxonomic issues for fish and invertebrates (from IPY)ANT 2005-02 Water samples from throughout water column to assess microbial content (from IPY) check with Els 280

AEBAR <strong>2012</strong>: Marine <strong>Biodiversity</strong><br />

taxa were orders of magnitude higher on the continental shelf than on the slope or abyss plain, <strong>and</strong><br />

shelf, slope, <strong>and</strong> abyssal samples were distinct from each other in multivariate analyses. Diversity,<br />

however, was comparable between shelf <strong>and</strong> abyssal sites <strong>and</strong> lowest on the slope. Bacterial<br />

diversity was highest in abyssal <strong>and</strong> slope samples, but abundance, biomass, production, <strong>and</strong><br />

activity of all enzymes except proteinase, which was highest in the abyss, were significantly higher<br />

in shelf samples. Benthic mega-epifaunal community composition was more strongly correlated<br />

with depth <strong>and</strong> seabed current speed than either water column productivity or seasonal ice cover,<br />

indicating that local hydrodynamics <strong>and</strong> their influence on advection of primary production are<br />

more important in determining distributions across the shelf than are local variations in production.<br />

Fauna on the seamounts were distinct from all other samples <strong>and</strong> were comprised of both Antarctic<br />

<strong>and</strong> Southern Ocean species, including remarkable populations of a new hyocrinid species on<br />

Admiralty seamount (Bowden et al. 2011, Eléaume et al. 2011).<br />

Published research to date has provided new insights into the distributions of several taxonomic<br />

groups (Lörz et al. 2009) , raised questions about the history of the northern seamount fauna over<br />

evolutionary time (Bowden et al. 2011), <strong>and</strong> contributed to a meta-analysis of the relationship<br />

between productivity <strong>and</strong> diversity in the deep sea (Leduc et al. <strong>2012</strong>). In combination with<br />

molecular phylogenies <strong>and</strong> existing data from around Antarctica, results from this project represent<br />

a major contribution to knowledge of the Antarctic marine ecosystem.<br />

Specific Objective 10: To describe trophic/ecosystem relationships in the Ross Sea ecosystem<br />

(pelagic <strong>and</strong> benthic, fish <strong>and</strong> invertebrates).<br />

Progress has been made on obtaining data from which to elucidate trophic relationships between<br />

organisms in the Ross Sector of Antarctica collected on the IPY-CAML survey in February–March<br />

2008. Two methods have been used. First, 1081 stomachs from 22 species of Antarctic fish were<br />

examined <strong>and</strong> the contents of the full or partially-full stomachs (comprising 776 fish) were<br />

identified to 68 prey codes. Index of Relative Importance (IRI) has been calculated from these data<br />

<strong>and</strong> diet overlap between fish species is presented. Second, stable isotope <strong>and</strong> elemental<br />

composition analysis of samples were carried out for carbon <strong>and</strong> nitrogen. In total, nearly 2000<br />

samples were analysed. Samples include:<br />

• Fish (N=662 muscle, N=377 liver samples, 22 species);<br />

• Cephalopods (N=193);<br />

• Pelagic invertebrates (N=407);<br />

• Benthic sediments (N=36);<br />

• Phytoplankton (N=92);<br />

• Benthic invertebrates (N=200 completed, 95 pending analysis);<br />

Results have already been used to assist in parameterising <strong>and</strong> validating the quantitative model of<br />

the food web of the Ross Sea (paper accepted by CCAMLR Science). Research on the shrinkage of<br />

Antarctic silverfish carried out as part of this objective has contributed to a paper presented to the<br />

Ministry of Fisheries Antarctic Fisheries Working Group <strong>and</strong> accepted for submission to the<br />

CCAMLR working group on fisheries assessment in September 2010 (Pinkerton et al. 2007,<br />

2009a, 2009b).<br />

Specific Objective 11: Assess molecular taxonomy <strong>and</strong> population genetics of selected Antarctic<br />

fauna <strong>and</strong> flora to estimate evolutionary divergence within <strong>and</strong> among ocean basins in circumpolar<br />

species. Provide DNA barcoding for all fish <strong>and</strong> multi-cellular invertebrate species by sequencing<br />

reference specimens in conjunction with Canadian Barcoding Centre, for specimen identification<br />

in gut content, plankton, <strong>and</strong> in taxonomic <strong>and</strong> population genetic projects.<br />

DNA data sets generated for selected Ross Sea taxa were combined with parallel data sets<br />

generated by other Institutes in order to estimate divergence within <strong>and</strong> among regions in the<br />

Southern Ocean. High levels of divergence, indicative of cryptic speciation, were found in all<br />

279

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