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Mesoscopic models of lipid bilayers and bilayers with embedded ...

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4.4 Results <strong>and</strong> discussion 49<br />

Shillcock <strong>and</strong> Lipowsky [50]. Another common characteristic <strong>of</strong> the pressure pr<strong>of</strong>ile<br />

which was found in the atomistic <strong>and</strong> CG simulations, <strong>and</strong> that we also observe in<br />

our simulations, is that the absolute value <strong>of</strong> the peak at HT interface is larger than<br />

the one at the WH interface. These similarities in the pressure pr<strong>of</strong>iles arise despite<br />

the different forces <strong>and</strong> parameters used in the simulations. For example, Lindahl<br />

<strong>and</strong> Edholm [77] show that the minimum at the HT interface is mainly due to electrostatic<br />

interactions, which are not present in our model nor in the CG <strong>models</strong> in<br />

the cited references. It is also worth commenting that Goetz <strong>and</strong> Lipowsky [21] <strong>and</strong><br />

Shillcock <strong>and</strong> Lipowsky [50] consider <strong>bilayers</strong> <strong>of</strong> single tail <strong>lipid</strong>s (CG Lennard-Jones<br />

MD <strong>and</strong> CG-DPD, respectively) like the ones we use here, while the results <strong>of</strong> Lindahl<br />

<strong>and</strong> Edholm [77], Gullingsrud <strong>and</strong> Schulten [81] <strong>and</strong> Groot <strong>and</strong> Rabone [24] refer to<br />

double tail <strong>lipid</strong>s (atomistic <strong>and</strong> CG-DPD, respectively). It is remarkable that different<br />

<strong>lipid</strong> topology, potentials, <strong>and</strong> parameterizations, produce the same shape <strong>of</strong> the<br />

pressure pr<strong>of</strong>iles. This suggests that the distribution <strong>of</strong> lateral pressure is more sensitive<br />

to the local densities <strong>and</strong> structure <strong>of</strong> the interfaces, rather than to the details<br />

<strong>of</strong> the forces or <strong>of</strong> the model.<br />

The major difference between the flexible <strong>and</strong> stiff <strong>lipid</strong>s considered here is in the<br />

hydrophobic core <strong>of</strong> the bilayer. A common feature is that the lateral pressure in this<br />

region is positive, showing that an outward pressure is compensating for the inward<br />

pressure at the HT interface, <strong>and</strong> that the chains tend to exp<strong>and</strong> the bilayer. However,<br />

the local structure <strong>of</strong> the pressure pr<strong>of</strong>ile depends on the <strong>lipid</strong> characteristics.<br />

For flexible <strong>lipid</strong>s first a local maximum <strong>and</strong> then a local minimum at the center <strong>of</strong><br />

the bilayer (z=0, MP interface) are present. The local minimum at the bilayer center<br />

corresponds to the region where the two monolayers are in contact, <strong>and</strong> where<br />

the density <strong>of</strong> the tail beads is lower. The shape <strong>of</strong> the pressure pr<strong>of</strong>ile for the flexible<br />

bilayer looks very similar to the ones obtained by Goetz <strong>and</strong> Lipowsky [21] <strong>and</strong><br />

Shillcock <strong>and</strong> Lipowsky [50] using MD <strong>and</strong> DPD simulations <strong>of</strong> coarse-grained <strong>lipid</strong>s,<br />

despite the fact that their results refer to stiff (via bond-bending potentials) <strong>lipid</strong>s. In<br />

our case, in the bilayer <strong>of</strong> stiff <strong>lipid</strong>s the pressure pr<strong>of</strong>ile increases monotonously to<br />

a large positive maximum in the bilayer center, which is higher in the non interdigitated<br />

bilayer. This is likely due to the fact that, because <strong>of</strong> interdigitation, the chains<br />

are more tightly <strong>and</strong> orderly packed. As a consequence <strong>of</strong> this packing order, the<br />

thermal collisions, which generate the outward pressure, are damped compared to<br />

the the case <strong>of</strong> a non interdigitated, albeit stiff, bilayer.<br />

It is interesting to observe (figures 4.6(d) <strong>and</strong> 4.6(f)) that, although the additional<br />

stiffness gives a negative contribution to the total lateral pressure, at the same time<br />

the contribution from the spring potential becomes more positive than in the case <strong>of</strong><br />

flexible <strong>lipid</strong>s. The net effect <strong>of</strong> these interactions is an increase in the values <strong>of</strong> the<br />

local pressure. The more positive values <strong>of</strong> the contribution from the spring potential<br />

are due to the fact that stiff <strong>lipid</strong>s have a larger end-to-end distance compared to<br />

flexible ones, hence the bonds along the chain are more stretched.

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