Mesoscopic models of lipid bilayers and bilayers with embedded ...

Mesoscopic models of lipid bilayers and bilayers with embedded ... Mesoscopic models of lipid bilayers and bilayers with embedded ...

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120 Mesoscopic model for lipid bilayers with embedded proteins [28] Groot, R.; Warren, P. J. Chem. Phys. 1997, 107, 4423–4435. [29] Cantor, R. Biochemistry 1997, 36, 2339–2344. [30] Cantor, R. J. Phys. Chem. B 1997, 101, 1723–1725. [31] Coveney, P.; Novik, K. Phys. Rev. E 1996, 54, 5134–5141. [32] Coveney, P.; Novik, K. Phys. Rev. E 1997, 55, 4831. [33] Novik, K.; Coveney, P. Int. J. Mod. Phys. C 1997, 8, 909–918. [34] Groot, R.; Madden, T. J. Chem. Phys. 1998, 108, 8713–8724. [35] Groot, R.; Madden, T.; Tildesley, D. J. Chem. Phys. 1999, 110, 9739–9749. [36] Schlijper, A.; Hoogerbrugge, P.; Manke, C. J. Rehol. 1995, 39, 567–579. [37] Schlijper, P.; Manke, C.; Madden, W.; Kong, Y. Int. J. Mod. Phys. C 1997, 8, 919–929. [38] Kong, Y.; Manke, C.; Madden, W.; Schlijper, A. J. Chem. Phys. 1997, 107, 592–602. [39] Spenley, N. Europhys. Lett. 2000, 49, 534–540. [40] Koelman, J.; Hoogerbrugge, P. Europhys. Lett. 1993, 21, 363–368. [41] Boek, E.; Coveney, P.; Lekkerkekker, H. J.Phys.: Condens. Matter 1996, 8, 9509–9512. [42] Boek, E.; Coveney, P.; Lekkerkekker, H.; van Schoot, P. Phys. Rev. E 1997, 55, 3124–3133. [43] Wijmans, C.; Smit, B.; Groot, R. J. Chem. Phys. 2001, 114, 7644–7654. [44] Wijmans, C.; Smit, B. Macromolecules 2002, 35, 7138–7148. [45] Jury, S.; Bladon, P.; Cates, M.; Krishna, S.; Hagen, M.; Ruddock, N.; Warren, P. Phys. Chem. Chem. Phys. 1999, 1, 2051–2056. [46] Groot, R. Langmuir 2000, 16, 7493–7502. [47] Warren, P. Curr. Opin. Colloid. Interf. Sci. 1998, 3, 620–624. [48] Español, P. SIMU, Challenges in molecular simulations 2002, 4, 59–77. [49] Willemsen, S.; Vlugt, T.; Hoefsloot, H.; Smit, B. J. Comp. Phys. 1998, 147, 507–517. [50] Shillcock, J.; Lipowsky, R. J. Chem. Phys. 2002, 117, 5048–5061. [51] Gibson, J.; Chen, K.; Chynoweth, S. J. Colloid Interface Sci. 1998, 206, 464–474. [52] Alberts, B.; Johnson, A.; Lewis, J.; Raff, M.; Roberts, K.; Walters, P. Molecular biology of the cell; Garlan Science: New York, 2002. [53] Rowlinson, J.; Widom, B. Molecular Theory of Capillarity; Clarendon Press: Oxford, 1982. [54] Jähnig, F. Biophys. J. 1996, 71, 1348–1349. [55] Kwok, R.; Evans, E. Biophys. J. 1981, 35, 637–652. [56] Chiu, S.; Clark, M.; Balaji, V.; Subramaniam, S.; Scott, H.; Jakobsson, E. Biophys. J. 1995, 69, 1230–1245. [57] Zhang, Y.; Feller, S.; Brooks, B.; Pastor, R. J. Chem. Phys. 1995, 103, 10252–10266. [58] Feller, S.; Pastor, R. Biophys. J. 1996, 71, 1350–1355. [59] Feller, S.; Pastor, R. J. Chem. Phys. 1999, 111, 1281–1287. [60] Marrink, S.; Mark, A. J. Phys. Chem. B 2001, 105, 6122–6127. [61] Feller, S.; Zhang, Y.; Pastor, R. J. Chem. Phys. 1995, 103, 10267–10276. [62] Tieleman, D.; Berendsen, H. J. Chem. Phys. 1996, 105, 4871–4880. [63] Chiu, S.; Jakobsson, E.; Subramaniam, S.; Scott, H. Biophys. J. 1999, 77, 2462–2469. [64] Venable, R.; Brooks, R.; Pastor, R. J. Chem. Phys. 2000, 112, 4822–4832. [65] Sun, F. Biophys. J. 2002, 85, 2511 –2519. [66] Varnik, F.; Baschnagel, J.; Binder, K. J. Chem. Phys. 2000, 113, 4444–4453. [67] Kirkwood, J.; Buff, F. J. Chem. Phys. 1949, 17, 338.

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120 <strong>Mesoscopic</strong> model for <strong>lipid</strong> <strong>bilayers</strong> <strong>with</strong> <strong>embedded</strong> proteins<br />

[28] Groot, R.; Warren, P. J. Chem. Phys. 1997, 107, 4423–4435.<br />

[29] Cantor, R. Biochemistry 1997, 36, 2339–2344.<br />

[30] Cantor, R. J. Phys. Chem. B 1997, 101, 1723–1725.<br />

[31] Coveney, P.; Novik, K. Phys. Rev. E 1996, 54, 5134–5141.<br />

[32] Coveney, P.; Novik, K. Phys. Rev. E 1997, 55, 4831.<br />

[33] Novik, K.; Coveney, P. Int. J. Mod. Phys. C 1997, 8, 909–918.<br />

[34] Groot, R.; Madden, T. J. Chem. Phys. 1998, 108, 8713–8724.<br />

[35] Groot, R.; Madden, T.; Tildesley, D. J. Chem. Phys. 1999, 110, 9739–9749.<br />

[36] Schlijper, A.; Hoogerbrugge, P.; Manke, C. J. Rehol. 1995, 39, 567–579.<br />

[37] Schlijper, P.; Manke, C.; Madden, W.; Kong, Y. Int. J. Mod. Phys. C 1997, 8, 919–929.<br />

[38] Kong, Y.; Manke, C.; Madden, W.; Schlijper, A. J. Chem. Phys. 1997, 107, 592–602.<br />

[39] Spenley, N. Europhys. Lett. 2000, 49, 534–540.<br />

[40] Koelman, J.; Hoogerbrugge, P. Europhys. Lett. 1993, 21, 363–368.<br />

[41] Boek, E.; Coveney, P.; Lekkerkekker, H. J.Phys.: Condens. Matter 1996, 8, 9509–9512.<br />

[42] Boek, E.; Coveney, P.; Lekkerkekker, H.; van Schoot, P. Phys. Rev. E 1997, 55, 3124–3133.<br />

[43] Wijmans, C.; Smit, B.; Groot, R. J. Chem. Phys. 2001, 114, 7644–7654.<br />

[44] Wijmans, C.; Smit, B. Macromolecules 2002, 35, 7138–7148.<br />

[45] Jury, S.; Bladon, P.; Cates, M.; Krishna, S.; Hagen, M.; Ruddock, N.; Warren, P. Phys. Chem.<br />

Chem. Phys. 1999, 1, 2051–2056.<br />

[46] Groot, R. Langmuir 2000, 16, 7493–7502.<br />

[47] Warren, P. Curr. Opin. Colloid. Interf. Sci. 1998, 3, 620–624.<br />

[48] Español, P. SIMU, Challenges in molecular simulations 2002, 4, 59–77.<br />

[49] Willemsen, S.; Vlugt, T.; Hoefsloot, H.; Smit, B. J. Comp. Phys. 1998, 147, 507–517.<br />

[50] Shillcock, J.; Lipowsky, R. J. Chem. Phys. 2002, 117, 5048–5061.<br />

[51] Gibson, J.; Chen, K.; Chynoweth, S. J. Colloid Interface Sci. 1998, 206, 464–474.<br />

[52] Alberts, B.; Johnson, A.; Lewis, J.; Raff, M.; Roberts, K.; Walters, P. Molecular biology <strong>of</strong><br />

the cell; Garlan Science: New York, 2002.<br />

[53] Rowlinson, J.; Widom, B. Molecular Theory <strong>of</strong> Capillarity; Clarendon Press: Oxford, 1982.<br />

[54] Jähnig, F. Biophys. J. 1996, 71, 1348–1349.<br />

[55] Kwok, R.; Evans, E. Biophys. J. 1981, 35, 637–652.<br />

[56] Chiu, S.; Clark, M.; Balaji, V.; Subramaniam, S.; Scott, H.; Jakobsson, E. Biophys. J. 1995,<br />

69, 1230–1245.<br />

[57] Zhang, Y.; Feller, S.; Brooks, B.; Pastor, R. J. Chem. Phys. 1995, 103, 10252–10266.<br />

[58] Feller, S.; Pastor, R. Biophys. J. 1996, 71, 1350–1355.<br />

[59] Feller, S.; Pastor, R. J. Chem. Phys. 1999, 111, 1281–1287.<br />

[60] Marrink, S.; Mark, A. J. Phys. Chem. B 2001, 105, 6122–6127.<br />

[61] Feller, S.; Zhang, Y.; Pastor, R. J. Chem. Phys. 1995, 103, 10267–10276.<br />

[62] Tieleman, D.; Berendsen, H. J. Chem. Phys. 1996, 105, 4871–4880.<br />

[63] Chiu, S.; Jakobsson, E.; Subramaniam, S.; Scott, H. Biophys. J. 1999, 77, 2462–2469.<br />

[64] Venable, R.; Brooks, R.; Pastor, R. J. Chem. Phys. 2000, 112, 4822–4832.<br />

[65] Sun, F. Biophys. J. 2002, 85, 2511 –2519.<br />

[66] Varnik, F.; Baschnagel, J.; Binder, K. J. Chem. Phys. 2000, 113, 4444–4453.<br />

[67] Kirkwood, J.; Buff, F. J. Chem. Phys. 1949, 17, 338.

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