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OMEGA Release 2.5.1.4 OpenEye Scientific Software, Inc.

OMEGA Release 2.5.1.4 OpenEye Scientific Software, Inc.

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<strong>OMEGA</strong>, <strong>Release</strong> <strong>2.5.1.4</strong><br />

More advanced rules may be included that alter the energy calculation for particular torsion angles. In these types<br />

of torsion rules, a SMARTS pattern with associated map indices is still used to define the molecular environment in<br />

which the rule is to be applied, but the sampled values appear on subsequent lines with one torsion angle per line. The<br />

first number per line indicates the torsion angle, in degrees, that <strong>OMEGA</strong> must sample. If a second number follows a<br />

torsion angle on the same line, the value is added to the total energy computed for that conformer. The following is an<br />

example of an advanced torsion rule.<br />

#experimental structure test<br />

O=[C:1][NX3H:2][c:3]([cH,nH0])[nH:4]<br />

0<br />

180 10.0<br />

<br />

4.2. Further specifications 21

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