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Zbornik - Društvo genetičara Srbije

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48 ZBORNIK ABSTRAKATA III KONGRESA GENETIÈARA SRBIJE II-Usm-1<br />

Subotica, 30. novembar - 4. decembar 2004.<br />

ANALIZA SASTAVA MIKROBIOLOŠKIH ZAJEDNICA RIZOSFERA<br />

Ramonda nathaliae I Ramonda serbica<br />

Ivana Bratiæ, M. Saviæ, Lidija Ðokiæ i Branka Vasiljeviæ<br />

Institut za molekularnu genetiku i genetièko inenjerstvo, Beograd<br />

Ramonda nathaliae i Ramonda serbica su tercijalni relikti i endemiti Balkanskog<br />

poluostrva koji rastu u pukotinama stena na strmim kreènjaèkim liticama u Siæevaèkoj<br />

klisuri (Srbija). Cilj ovog rada je bio da se utvrdi sastav mikrobioloških zajednica<br />

rizosfera R. nathalia i R. serbica metodama PCR (reakcija lanèane polimerizacije) i<br />

RFLP (polimorfizam duina restrikcionih fragmenata). Za PCR metodu je korišæen<br />

univerzalni par prajmera koji selektivno amplifikuje fragment bakterijskog 16S rRNA<br />

gena. PCR fragmenti (duine oko 1300bp) su dobijeni iz ukupne DNA izolovane iz<br />

rizosfera R. serbica i R. nathaliae. PCR produkti su potom klonirani u pUC19 vektor i<br />

restrikciono analizirani pomoæu RsaI enzima. Restrikcioni profili su potvrdili prisustvo<br />

89 razlièitih operativnih taksonomskih jedinica (OTJ) poreklom iz rizosfere R. nathaliae,<br />

a samo 13 razlièitih OTJ poreklom iz rizosfere R. serbica.<br />

STUDY OF MICROBIAL COMMUNITY COMPOSITION FROM<br />

RHIZOSPHERE SOILS OF Ramonda nathaliae AND Ramonda serbica<br />

Ramonda nathaliae i Ramonda serbica, the Tertiary relict and the endemic species of the<br />

Balkan, grow in the rock fissures on steep limestone cliffs of the Sicevo gorge (Serbia).<br />

The aim of this study was to analyse microbial community composition of rhizosphere<br />

soils of R. nathaliae and R. serbica by PCR (polymerase chain reaction) and RFLP (restriction<br />

fragment length polymorfism) methods. A universal primer pair for PCR was<br />

designed to selectively amplify a fragment of bacterial 16S rRNA gene. PCR fragments<br />

(approximately 1300 bp) were amplified from total DNA that was isolated from<br />

rhizosphere soils of R. serbica and R. nathaliae. PCR products were cloned into pUC19<br />

plasmid and clones were subjected to restriction analysis employing restriction enzyme<br />

RsaI. Restriction profiles indicated the presence of 89 different operative taxonomic units<br />

(OTU) in the rhizosphere soil of R. nathalia, but only 13 different OTUs from the<br />

rhizosphere soil of R. serbica.

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