BIOBAR : USER MANUAL
BIOBAR : USER MANUAL
BIOBAR : USER MANUAL
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Only DNA sequences can be used.. An error message will be displayed if<br />
a protein or RNA sequence is selected. If both DNA and protein<br />
sequences are selected, an error message will be displayed and %GC will<br />
only be calculated for the DNA sequence(s).<br />
Calculates the %GC content for the entire sequence and displays it in a<br />
table.<br />
o Window %GC<br />
Only DNA sequences can be used.. An error message will be displayed if<br />
a protein or RNA sequence is selected. If both DNA and protein<br />
sequences are selected, an error message will be displayed and %GC will<br />
only be calculated for the DNA sequence(s).<br />
Calculates the %GC content for windows of length defined by user in the<br />
Sequence Statistics Options and displays them in a table, indexed by<br />
position.<br />
o Nucleotide Frequencies<br />
Only DNA sequences can be used. An error message will be displayed if a<br />
protein or RNA sequence is selected. If both DNA and protein sequences<br />
are selected, an error message will be displayed and nucleotide<br />
frequencies will only be calculated for the DNA sequence(s).<br />
Calculates frequency of each nucleotide for the entire sequence and<br />
displays it in a table.<br />
o N-Gram<br />
Only DNA sequences can be used. An error message will be displayed if<br />
a protein or RNA sequence is selected. If sequences of all types are<br />
selected, the N-Grams will only be calculated for the DNA sequence(s).<br />
IUB characters will be ignored<br />
Takes the value of N from Sequence Statistics Options and generates a list<br />
of all possible “words” of length N (from the characters A, T, C, G) and<br />
their counts within the sequence.<br />
See Sequence Statistics Options for other options relating to N-Grams<br />
o Codon Usage Table<br />
Only DNA sequences can be used. An error message will be displayed if<br />
a protein or RNA is selected. If sequences of all types are selected, the<br />
codon usage table will only be generated for the DNA sequence(s). IUB<br />
characters will be ignored<br />
Generates a codon usage table (using the offset from Sequence Statistics<br />
Options) using the sequence(s) that are selected.<br />
See Sequence Statistics Options for options relating to table display<br />
o Calculate Molecular Weight<br />
Open to DNA, RNA and protein sequences.
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