Sample A: Cover Page of Thesis, Project, or Dissertation Proposal
Sample A: Cover Page of Thesis, Project, or Dissertation Proposal
Sample A: Cover Page of Thesis, Project, or Dissertation Proposal
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Figure 3.6: Conc<strong>or</strong>dance summary. The number <strong>of</strong> DE members <strong>of</strong> the ProbeSet lists that are shared in<br />
the designated categ<strong>or</strong>ies between the Bhattacharjee and Stearmen experiment results. Numbers in nonoverlapping<br />
regions are the total list sizes and the numbers in parentheses below are the number <strong>of</strong><br />
ProbeSets unique to that categ<strong>or</strong>y. Numbers in overlap regions reflect shared ProbeSet list members. The<br />
red-circled numbers show the percentage <strong>of</strong> these DE ProbeSets which have contradict<strong>or</strong>y regulation<br />
patterns (µ1 > µ2) between datasets f<strong>or</strong> each cleansing methodology. The light blue circle shows the same<br />
f<strong>or</strong> the intersecting DE ProbeSets.<br />
While perf<strong>or</strong>mance improvements are not always larger than that obtained with the complete data<br />
set (except f<strong>or</strong> the kNN model), f<strong>or</strong> all three classification approaches we demonstrate some<br />
improvement using the BaFL-pipeline generated values and any <strong>of</strong> the candidate gene lists. We<br />
do see a large perf<strong>or</strong>mance gain associated with the removal <strong>of</strong> uninf<strong>or</strong>mative ProbeSets f<strong>or</strong> the<br />
LDA model. The fact that there is no loss, and in some cases a gain, in perf<strong>or</strong>mance with a ten-<br />
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