Sample A: Cover Page of Thesis, Project, or Dissertation Proposal

#determine outliers
lowrs1=nonzero(less_equal(mu, ceil(r.mean(mu)-
(2*r.sd(mu)))))
upprs1=nonzero(greater_equal(mu,
floor(r.mean(mu)+(2*r.sd(mu)))))
lowrs2=nonzero(less_equal(prbs, ceil(r.mean(prbs)-
(2*r.sd(prbs)))))
upprs2=nonzero(greater_equal(prbs,
floor(r.mean(prbs)+(2*r.sd(prbs)))))
for j in lowrs1:
cmn=nonzero(equal(j,lowrs2))
if len(cmn)==1:
r.points(x[j],mu[j], pch='X')
tmp="update sample_mask set exclude = true,
description = 'array probe intensities and numbers below 2 stdevs"+"'
where mask_id = '"+msk[ptr[j]]+"'"
fp.write('\n'+msk[ptr[j]]+' excluded:\tprobe
intensities and numbers below 2 stdevs')
else:
cmn=nonzero(equal(j,upprs2))
if len(cmn)==1:
r.points(x[j],mu[j], pch='X')
tmp="update sample_mask set exclude =
true, description = 'array probe intensities below 2 stdevs and numbers
above stdevs"+"' where mask_id = '"+msk[ptr[j]]+"'"
fp.write('\n'+msk[ptr[j]]+'
excluded:\tprobe intensities below 2 stdevs and numbers above 2
stdevs')
else:
r.points(x[j],mu[j], pch='X')
tmp="update sample_mask set exclude =
true, description = 'avg array probe intensities below 2 stdevs"+"'
where mask_id = '"+msk[ptr[j]]+"'"
fp.write('\n'+msk[ptr[j]]+'
excluded:\tprobe intensities below 2 stdevs')
cur.execute(tmp)
conn.commit()
for j in upprs1:
cmn=nonzero(equal(j,upprs2))
if len(cmn)==1:
r.points(x[j],mu[j], pch='X')
tmp="update sample_mask set exclude = true,
description = 'array probe intensities and numbers above 2 stdevs"+"'
where mask_id = '"+msk[ptr[j]]+"'"
fp.write('\n'+msk[ptr[j]]+' excluded:\tprobe
intensities and numbers above 2 stdevs')
else:
cmn=nonzero(equal(j,lowrs2))
if len(cmn)==1:
r.points(x[j],mu[j], pch='X')
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