Sample A: Cover Page of Thesis, Project, or Dissertation Proposal

fp=open(logfile, 'a')
fp.write('\n')
fp.write('SNP filter:\n')
conn.close()
snp_filter(usr, pswd, db, msk, msk_tab, fp)
def XH_filter(usr, pswd, db, msk, msk_tab, fp):
cur, conn= make_connect(usr, pswd, db)
exp=get_exp(usr, pswd, db)
notes='probes w/o xhybrid'
k=0
#print 'Map length ', len(map), map[k]
pid_tbles=[]
#fp=open(logfile,'a')
for i in msk:
trl= 'CREATE table tmp as select count(*), probeset_id,
xhybrid_list.x, xhybrid_list.y from xhybrid_list inner join '
trl=trl+ msk[k] +'_snp on ( '+ msk[k] +'_snp.x =
xhybrid_list.x and ' +msk[k]+ '_snp.y = xhybrid_list.y) '
trl=trl+ 'group by probeset_id, xhybrid_list.x,
xhybrid_list.y having count(*) = 1 order by probeset_id,
xhybrid_list.x, xhybrid_list.y'
cur.execute(trl)
conn.commit()
trl= 'create table ' +msk[k]+'_XH as select xhybrid_list.*
from xhybrid_list inner join tmp on (tmp.x = xhybrid_list.x and tmp.y =
xhybrid_list.y) order by probeset_id, xhybrid_list.x, xhybrid_list.y'
cur.execute(trl)
conn.commit()
fp.write('\tTable '), fp.write(msk[k]+ '_XH '), fp.write('
created.\n')
pid_tbles.append(msk[k]+ '_XH')
trl='drop table tmp'
cur.execute(trl)
conn.commit()
cur, conn=UpdateWorkReg(cur, conn, msk[k]+'_XH', exp,
'xhybrid_filter', usr, msk[k]+'_snp', 'xhybrid_list', notes)
k+=1
onto='select * from '+msk[k-1]+'_XH'
cur.execute(onto)
desc=cur.description
conn.close()
fp=UpdateOntology2(usr, pswd, db, desc, exp, 'xhybrid_filter',
'_XH', notes, '', fp)
fp.close()
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