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Untitled - D Ank Unlimited

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light zone 453 linkage disequilibrium<br />

Side Scatter<br />

1000<br />

800<br />

600<br />

400<br />

200<br />

0<br />

0<br />

200<br />

400<br />

600<br />

800<br />

Forward Light Scatter<br />

1000<br />

Neutrophils<br />

Monocytes<br />

Lymphocytes<br />

Each dot represents data from one cell. The bigger the cell, the larger the<br />

FSC signal and the farther to the right the dot will appear on the x-axis.<br />

The more complex or granular the cell, the larger the SCC signal and the<br />

higher it will appear on the y-axis. It is possible to discern lymphocytes,<br />

monocytes, and neutrophils in this plot.<br />

1000<br />

800<br />

600<br />

400<br />

200<br />

0<br />

400<br />

450<br />

FITC<br />

500<br />

550<br />

600<br />

Wavelength (nm)<br />

650<br />

700<br />

The absorption and emission spectra for the FITC fluorochrome are<br />

shown. The peak absorption is around 488 nm and the peak emission is<br />

around 530 nm.<br />

CD 19 PE<br />

10 4<br />

10 3<br />

10 2<br />

10 1<br />

10 0<br />

10 0<br />

10 1<br />

10 2<br />

CD3 FITC<br />

FITC-positive cells fall in the lower right quadrant and PE-positive cells<br />

fall in the upper left quadrant. Cells that are positive for both FITC and<br />

PE are in the upper right quadrant.<br />

flow stream yields data on cell granularity or fine structure.<br />

Light scatter depends on such factors as cell size and shape,<br />

cell orientation in flow, cellular internal structure, laser beam<br />

shape and wavelength, and angle of light collection.<br />

light zone<br />

A region of a germinal center in secondary lymphoid tissue<br />

containing centrocytes that do not divide but interact with<br />

10 3<br />

10 4<br />

follicular dendritic cells. A site of isotype switching where<br />

B cells in which immunoglobulin genes have undergone<br />

somatic hypermutation are negatively selected to facilitate<br />

peripheral B cell tolerance or selected for affinity maturation,<br />

i.e., increased affinity for antigen.<br />

limiting dilution<br />

A method of preparing aliquots that contain single cells<br />

through dilution to a point where each aliquot contains only<br />

one cell. The apportionment of cells by this method follows<br />

the Poissonian distribution that yields 37% of aliquots without<br />

cells and 63% with one or more cells. This technique<br />

may be used to estimate the frequency of a certain cell in<br />

a population. For example, it may be employed to approximate<br />

the frequency of helper T lymphocytes, cytotoxic T<br />

lymphocytes, or B lymphocytes in a lymphoid cell suspension<br />

or to isolate cells for cloning in the production of<br />

monoclonal antibodies.<br />

lineage infidelity<br />

Cells that undergo neoplastic transformation may express<br />

molecules on their surfaces that are alien to their lineage.<br />

linear determinant<br />

Antigenic determinant produced by adjacent amino acid<br />

residues in the covalent sequence in proteins. Linear determinants<br />

of six amino acids interact with specific antibodies.<br />

Occasionally, they may appear on the surface of a native<br />

folded protein, but they are more commonly unavailable<br />

in the native configuration and become available only for<br />

interaction with antibody upon denaturation of the protein.<br />

linear epitope<br />

Antigenic determinant of a protein molecule recognized<br />

by an antibody that consists of a linear sequence of amino<br />

acids within the protein’s primary structure.<br />

linear staining<br />

The interaction of IgG and possibly C3 on peripheral capillary<br />

loops of renal glomeruli in antiglomerular basement<br />

membrane diseases such as Goodpasture’s syndrome.<br />

The use of fluorescein-labeled goat or rabbit antiimmunoglobulin<br />

preparations permits this smooth, thin, delicate,<br />

ribbon-like staining pattern to be recognized by immunofluorescence<br />

microscopy. This pattern is in sharp contrast to<br />

the lumpy, bumpy patterns of immunofluorescence staining<br />

seen in immune complex diseases.<br />

linkage analysis<br />

The use of simple tandem repeat sequences or microsatellites<br />

to screen an entire genome for linkage with a trait and<br />

identify non-MHC loci linked with disease.<br />

linkage disequilibrium<br />

The appearance of human leukocyte antigen (HLA) genes<br />

on the same chromosome with greater frequency than<br />

would be expected by chance. This has been demonstrated<br />

by detailed studies of populations and families, employing<br />

outbred groups in which numerous different haplotypes<br />

are present. With respect to the HLA-A, -B, and -C loci,<br />

a possible explanation for linkage disequilibrium is that<br />

the genes have not had sufficient time to reach equilibrium;<br />

however, this possibility is remote for HLA-A, -B,<br />

and -D linkage disequilibrium. Natural selection has<br />

been suggested to maintain linkage disequilibrium that is<br />

advantageous. If products of two histocompatibility loci<br />

play a role in the immune response and appear on the same<br />

chromosome, they may reinforce one another and represent<br />

an advantageous association. An example of linkage<br />

L

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