MUSTANG is a novel family of domesticated transposase genes ...
MUSTANG is a novel family of domesticated transposase genes ... MUSTANG is a novel family of domesticated transposase genes ...
Supplementary Figure 1 Neighbor-joining tree of the mudrA superfamily. The tree depicted is a majority rule consensus tree constructed from an alignment of the MUDR domain regions of mudrA-like genes. The tree is rooted with fungal MULE hop78 (Chalvet et al. 2003). Bootstrap values are shown at nodes. Oryza sativa subspecies japonica gene names are shown beginning with “R”, Oryza sativa subspecies indica with “Ri”, Arabidopsis thaliana with “A”, Zea mays with “Z”, Medicago truncatula with “M”, and Populus trichocarpa with “P”. Supplementary Figure 2 Color version of Figure 4. Genes shown in the same color share protein-level similarity according to an all-against-all BLASTP search. See supplementary table 4 for E values. Downloaded from http://mbe.oxfordjournals.org/ by guest on July 15, 2013
Table 1 The number and distribution of mudrA genes in rice and Arabidopsis. Arabidopsis Rice TAMs TDMs pTAMs total 143 45 18 ORF 77 36 9 expressed 2 18 0 cDNA 1 11 0 EST 2 18 0 total 498 76 60 ORF 493 76 60 expressed 32 28 6 cDNA 26 25 3 EST 12 20 4 TAMs, TDMs, and pTAMs refer to transposon-associated mudrA genes, transposon-dissociated mudrA genes, and potentially transposon-associated mudrA genes, respectively. The latter class includes elements that lack well-defined TSDs but have other transposon features such as TIRs and repetitiveness extending beyond the coding region. Downloaded from http://mbe.oxfordjournals.org/ by guest on July 15, 2013
- Page 1 and 2: MUSTANG is a novel family of domest
- Page 3 and 4: Introduction Mobile elements have t
- Page 5 and 6: (www.tigr.org) and from rice build
- Page 7 and 8: For the phylogenetic analysis, CLUS
- Page 9 and 10: Clustering analysis, based on the M
- Page 11 and 12: meristem, and seedling leaves. As a
- Page 13 and 14: Literature Cited Agrawal, A., Q. M.
- Page 15 and 16: Lisch, D. 2002. Mutator transposons
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Supplementary Figure 1 Neighbor-joining tree <strong>of</strong> the mudrA super<strong>family</strong>. The tree depicted <strong>is</strong> a<br />
majority rule consensus tree constructed from an alignment <strong>of</strong> the MUDR domain regions <strong>of</strong><br />
mudrA-like <strong>genes</strong>. The tree <strong>is</strong> rooted with fungal MULE hop78 (Chalvet et al. 2003). Bootstrap<br />
values are shown at nodes. Oryza sativa subspecies japonica gene names are shown beginning<br />
with “R”, Oryza sativa subspecies indica with “Ri”, Arabidops<strong>is</strong> thaliana with “A”, Zea mays<br />
with “Z”, Medicago truncatula with “M”, and Populus trichocarpa with “P”.<br />
Supplementary Figure 2 Color version <strong>of</strong> Figure 4. Genes shown in the same color share<br />
protein-level similarity according to an all-against-all BLASTP search. See supplementary table<br />
4 for E values.<br />
Downloaded from<br />
http://mbe.oxfordjournals.org/<br />
by guest on July 15, 2013
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