21.07.2013 Views

MUSTANG is a novel family of domesticated transposase genes ...

MUSTANG is a novel family of domesticated transposase genes ...

MUSTANG is a novel family of domesticated transposase genes ...

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

Eddy, S. R. 1998. Pr<strong>of</strong>ile hidden Markov models. Bioinformatics 14:755-763.<br />

Felsenstein, J. 2004. PHYLIP (Phylogeny Inference Package) version 3.6b. D<strong>is</strong>tributed by the<br />

author, Department <strong>of</strong> Genome Sciences, University <strong>of</strong> Washington, Seattle.<br />

Hammer, S. E., S. Strehl, and S. Hagemann. 2005. Homologs <strong>of</strong> Drosophila P transposons were<br />

mobile in zebraf<strong>is</strong>h but have been <strong>domesticated</strong> in a common ancestor <strong>of</strong> chicken and<br />

human. Mol. Biol. Evol. 22:833-844.<br />

Hershberger, R. J., M. I. Benito, K. J. Hardeman, C. Warren, V. L. Chandler, and V. Walbot.<br />

1995. Characterization <strong>of</strong> the major transcripts encoded by the regulatory MuDR<br />

transposable element <strong>of</strong> maize. Genetics 140:1087-1098.<br />

Higgins, D., J. Thompson, and T. Gibson. 1994. CLUSTAL W: improving the sensitivity <strong>of</strong><br />

progressive multiple sequence alignment through sequence weighting, position-specific<br />

gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.<br />

Hudson, M. E., D. R. L<strong>is</strong>ch, and P. H. Quail. 2003. The FHY3 and FAR1 <strong>genes</strong> encode<br />

<strong>transposase</strong>-related proteins involved in regulation <strong>of</strong> gene expression by the<br />

phytochrome A-signaling pathway. Plant J. 34:453-471.<br />

Hurst, G. D., and J. H. Werren. 2001. The role <strong>of</strong> self<strong>is</strong>h genetic elements in eukaryotic<br />

evolution. Nat. Rev. Genet. 2:597-606.<br />

Hurst, L. D. 2002. The Ka/Ks ratio: diagnosing the form <strong>of</strong> sequence evolution. Trends Genet.<br />

18:486.<br />

International Human Genome Sequencing Consortium. 2001. Initial sequencing and analys<strong>is</strong> <strong>of</strong><br />

the human genome. Nature 409:860-921.<br />

Kent, W. J. 2002. BLAT--the BLAST-like alignment tool. Genome Res. 12:656-664.<br />

Lin, R., and H. Wang. 2004. Arabidops<strong>is</strong> FHY3/FAR1 gene <strong>family</strong> and d<strong>is</strong>tinct roles <strong>of</strong> its<br />

members in light control <strong>of</strong> Arabidops<strong>is</strong> development. Plant Physiol. 136:4010-4022.<br />

Downloaded from<br />

http://mbe.oxfordjournals.org/<br />

by guest on July 15, 2013

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!