pdf - A test of psbK-psbI and atpF-atpH as potential plant DNA - ArBOL

Nature Precedings : hdl:10101/npre.2008.1896.1 : Posted 16 May 2008
matK trnH- atpF- psbK- 4 loci matK+ matK+atpF- matK+psbK- matK+ matK+
psbA atpH psbI
trnHpsbA
12
atpH+trnHpsbA
psbI+trnHpsbA
atpFatpH
matK+psbKpsbI+psbKpsbI
atpF-atpH
Mean of all interspecific
distances 0.0134 0.0255 0.0345 0.0106 0.0172 0.0175 0.0189 0.0157 0.0168 0.0118 0.0150
St. deviation +/- 0.0127 0.0227 0.0665 0.0096 0.0151 0.0154 0.0180 0.0121 0.0201 0.0092 0.0159
Mean of all intraspecific
distances 0.0012 0.0017 0.0004 0.0005 0.0009 0.0012 0.0009 0.0011 0.0007 0.0009 0.0007
St. deviation +/- 0.0040 0.0041 0.0015 0.0012 0.0015 0.0026 0.0017 0.0021 0.0020 0.0026 0.0016
Mean Theta 0.0012 0.0015 0.0007 0.0005 0.0008 0.0012 0.0009 0.0010 0.0007 0.0009 0.0007
St. deviation +/- 0.0037 0.0032 0.0023 0.0010 0.0013 0.0023 0.0015 0.0018 0.0018 0.0024 0.0015
Mean coalescent depth 0.0017 0.0023 0.0008 0.0008 0.0013 0.0017 0.0014 0.0016 0.0012 0.0013 0.0011
St. deviation +/- 0.0050 0.0047 0.0023 0.0016 0.0018 0.0032 0.0021 0.0026 0.0026 0.0033 0.0021
Number of measurements for
all intraspecific distances
93 90 84 91 95 95 95 95 95 95 95
Number of measurements for
all interspecific distances
200 194 168 194 206 206 206 206 206 206 206
Table 3. Measures of inter- and intra-specific K2P distances for four potential barcodes and different combinations applied to a selective sampling
from the KNP.