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tel-00827710, version 1 - 29 May 2013 Figure 10. Pathways leading to type I IFN production. Original design from J. Decalf. 4) Effects of type I IFN As mentioned previously, type I IFN were first discovered for their antiviral properties; they limit viral replication by inhibiting protein translation, viral polymerase activity and by promoting RNA degradation and/or cell apoptosis. Importantly, these cytokines are also known for their ability to modulate the function of immune cells. They can act directly, via signaling through the IFN-alpha receptor (IFNAR), or indirectly by inducing the secretion of chemokines that recruit cells to the site of immunization or cytokines that regulate cell functions, or activate bystander cells. (a) Signaling pathways activated by type I IFN In spite of the high number of type I IFN isoforms, they bind to and signal through the same IFNAR receptor, although they do appear to differ in the binding affinity for the receptor. The receptor is composed of two subunits, IFNAR1 and IFNAR2, and is expressed in most tissues. The main signaling pathway described downstream of IFNAR is the Janus Activated Kinase /Signal Transducer and Activation of Transcription (JAK/STAT) pathway (Figure 11, 64

tel-00827710, version 1 - 29 May 2013 A). IFNAR is constituvely associated with Tyrosine Kinase 2 (Tyk2) and JAK1, which are activated by transphosphorylation upon IFN interaction with the receptor. These activated kinases then phosphorylate IFNAR on tyrosine residues that serve as docking sites for STAT molecules. STATs become substrates for phosphorylation when they are recruited to the docking sites on the receptor. Once phosphorylated, the STATs dimerize and migrate to the nucleus where they will regulate the expression of Interferon-Stimulated Genes (ISGs). Although STAT1 and 2 are the most common mediators of the type I IFN response, other STAT molecules can be recruited and mediate signaling depending on the immunization conditions and cell type. Moreover, signaling via particular STAT molecules can result in differential downstream effects that have been implicated in the pleiotropic roles of type I IFN. This point will be further discussed later in this thesis. Figure 11. Signaling pathways activated by type I IFN. Figure from Hervas-Stubb et al., 2011. IFNAR can activate more than the JAK/ STAT pathway (Hervas-Stubbs et al., 2011); the Mitogen Activated Protein Kinase (MAPK) and the phosphoinositide-3-kinase (PI3K) pathways can also be activated. Cross-talk between these different pathways has been observed (Figure 11, B, C, D). Page 65 of 256

tel-00827710, version 1 - 29 May 2013<br />

Figure 10. Pathways leading to type I IFN production. Original <strong>de</strong>sign from J. Decalf.<br />

4) Effects of type I IFN<br />

As mentioned previously, type I IFN were first discovered for their antiviral properties; they<br />

limit viral replication by inhibiting protein translation, viral polymerase activity and by<br />

promoting RNA <strong>de</strong>gradation and/or cell apoptosis. Importantly, these cytokines are also<br />

known for their ability to modulate the function of immune cells. They can act directly, via<br />

signaling through the IFN-alpha receptor (IFNAR), or indirectly by inducing the secr<strong>et</strong>ion of<br />

chemokines that recruit cells to the site of immunization or cytokines that regulate cell<br />

functions, or activate bystan<strong>de</strong>r cells.<br />

(a) Signaling pathways activated by type I IFN<br />

In spite of the high number of type I IFN isoforms, they bind to and signal through the same<br />

IFNAR receptor, although they do appear to differ in the binding affinity for the receptor. The<br />

receptor is composed of two subunits, IFNAR1 and IFNAR2, and is expressed in most<br />

tissues. The main signaling pathway <strong>de</strong>scribed downstream of IFNAR is the Janus Activated<br />

Kinase /Signal Transducer and Activation of Transcription (JAK/STAT) pathway (Figure 11,<br />

64

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