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tel-00827710, version 1 - 29 May 2013 21. Hadrup SR, Bakker AH, Shu CJ, Andersen RS, van Veluw J, Hombrink P, Castermans E, Thor Straten P, Blank C, Haanen JB, Heemskerk MH, Schumacher TN (2009) Parallel detection of antigen-specific T-cell responses by multidimensional encoding of MHC multimers. Nat Methods 6 (7):520-526. doi:10.1038/nmeth.1345 22. Chattopadhyay PK, Melenhorst JJ, Ladell K, Gostick E, Scheinberg P, Barrett AJ, Wooldridge L, Roederer M, Sewell AK, Price DA (2008) Techniques to improve the direct ex vivo detection of low frequency antigen-specific CD8+ T cells with peptide- major histocompatibility complex class I tetramers. Cytometry A 73 (11):1001-1009. doi:10.1002/cyto.a.20642 23. Alanio C, Lemaitre F, Law HKW, Hasan M, Albert ML (2010) Enumeration of human antigen-specific naive CD8+ T cells reveals conserved precursor frequencies. Blood 115 (18):3718-3725. doi:10.1182/blood-2009-10-251124 24. Day CL (2003) Ex vivo analysis of human memory CD4 T cells specific for hepatitis C virus using MHC class II tetramers. J Clin Invest 112 (6):831-842. doi:10.1172/JCI200318509 25. Moon J, Chu H, Pepper M, Mcsorley S, Jameson S, Kedl R, Jenkins M (2007) Naive CD4+ T Cell Frequency Varies for Different Epitopes and Predicts Repertoire Diversity and Response Magnitude. Immunity 27 (2):203-213. doi:10.1016/j.immuni.2007.07.007 26. Moon JJ, Chu HH, Hataye J, Pagán AJ, Pepper M, Mclachlan JB, Zell T, Jenkins MK (2009) Tracking epitope-specific T cells. Nature Protocols 4 (4):565-581. doi:10.1038/nprot.2009.9 27. Obar J, Khanna K, Lefrancois L (2008) Endogenous Naive CD8+ T Cell Precursor Frequency Regulates Primary and Memory Responses to Infection. Immunity 28 (6):859- 869. doi:10.1016/j.immuni.2008.04.010 28. Legoux F, Debeaupuis E, Echasserieau K, De La Salle H, Saulquin X, Bonneville M (2010) Impact of TCR reactivity and HLA phenotype on naive CD8 T cell frequency in humans. J Immunol 184 (12):6731-6738. doi:10.4049/jimmunol.1000295 29. Jenkins MK, Chu HH, Mclachlan JB, Moon JJ (2010) On the Composition of the Preimmune Repertoire of T Cells Specific for Peptide–Major Histocompatibility Complex Ligands. Annu Rev Immunol 28 (1):275-294. doi:10.1146/annurev-immunol-030409- 101253 226

tel-00827710, version 1 - 29 May 2013 30. Pittet MJ, Valmori D, Dunbar PR, Speiser DE, Liénard D, Lejeune F, Fleischhauer K, Cerundolo V, Cerottini JC, Romero P (1999) High frequencies of naive Melan-A/MART- 1-specific CD8(+) T cells in a large proportion of human histocompatibility leukocyte antigen (HLA)-A2 individuals. J Exp Med 190 (5):705-715 31. Wooldridge L, Lissina A, Cole DK, van den Berg HA, Price DA, Sewell AK (2009) Tricks with tetramers: how to get the most from multimeric peptide-MHC. Immunology 126 (2):147-164. doi:10.1111/j.1365-2567.2008.02848.x 32. Roederer M (2008) How many events is enough? Are you positive? Cytometry 73A (5):384-385. doi:10.1002/cyto.a.20549 Page 227 of 256

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