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tel-00827710, version 1 - 29 May 2013<br />

4. Notes<br />

1. Although the protocol <strong>de</strong>scribed here focuses on antigen-specific T cells harvested from human<br />

peripheral blood and from mice, similar procedures can be applied to other non-human samples<br />

[25-27] and to other tissues (e.g., tumor infiltrating lymphocytes, TILs). For human peripheral<br />

blood, prepare PBMCs using Ficoll separation. For tissue-based applications, we recommend<br />

including a CD45 staining in one of the channels in or<strong>de</strong>r to segregate CD45-positive<br />

hematopoi<strong>et</strong>ic cells, and <strong>de</strong>crease noise in the assay.<br />

2. Although the protocol <strong>de</strong>scribed here focuses on HLA A2 individuals as example, it can be applied<br />

to any HLA specificity without modification. Moreover, enrichment protocols would also be<br />

applicable for CD4 + T cell, NK-T and γδT cell populations, using respective multimer reagents.<br />

3. Although the protocol <strong>de</strong>scribed here is based on the combination of PE-labeled multimers and anti-<br />

PE microbeads, you can similarly stain with APC-labeled multimers and enrich with anti-APC<br />

microbeads.<br />

4. When establishing the assay on human samples, we found a b<strong>et</strong>ter recovery of rare specific T cells<br />

when using MS columns, regardless of the number of loa<strong>de</strong>d PBMC used (1x10 7 -4x10 8 starting cell<br />

populations tested). Exceptions concern TILs, for which you need to use LS columns in or<strong>de</strong>r to<br />

avoid clumps and blockage of the column. Similarly, for mouse experiments, LS columns are<br />

recommen<strong>de</strong>d due to potential of stromal tissue from lymph no<strong>de</strong>s and spleen to clog the columns.<br />

5. This recipe was chosen based on our experience in the lab. Other conventional sorting buffers can<br />

be used, but may result in slightly different background signals. Note that sodium azi<strong>de</strong> should be<br />

omitted if planning to cultivate the cells or perform functional assays.<br />

6. Concerning MHC multimers, there are two options. Commercial vendors exist and will sell off-the-<br />

shelf reagents as well as generate custom materials. Provi<strong>de</strong>rs inclu<strong>de</strong> Beckman Coulter,<br />

ProImmune and Immu<strong>de</strong>x. The alternative and recommen<strong>de</strong>d option is to prepare your own<br />

monomers, thus facilitating multimerization with streptavidin coupled to your <strong>de</strong>sired fluorescent<br />

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