Incidence, Distribution and Characteristics of Major Tomato Leaf ...

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Incidence, distribution and characteristics of major tomato leaf curl and mosaic virus diseases 198 Figure A.6.1b) ToLCV-Ugf ToLCV-Ugfseq ---------------------ACGACTA-------TCAC--------------------- 11 ATLCV-TZ ---------------------ACGACTA-------TCCCCTTCA--ATCACAATACTCAT 30 TbLCZwV-md ---------------------GTCACTAGGGGTGGTGGTCTTACGCATCGCACTGGTAAA 39 TbLCZwV ---------------------ACGACTA-------TCGCCTTCT--ATTACAATACTATT 30 TCSV-SA ---------------------ACGACTA-------TCGCCCTCT--ATTACAATACTATT 30 CMV-Ng ---------------------CCGACTA-------TCACCCTCG--ACTATTATACTACT 30 TbLCV-Ch ---------------------ACGACTC-------TCTCCCTCT--ATGACAATACTGAT 30 ToLCV-Ma ---------------------ACGACTC-------TCTCCCTCT--ATGACAATACTATT 30 SCLV-Jr ---------------------ACGACTC-------TCGCCCTCT--ATTACAATACTATT 30 ToLCV-Ph ---------------------TCGACTA-------TCGC--------------------- 11 CoLCV-SD ---------------------TCTGCTT-------TCCCCTTCA--ATCACTATACTAAT 30 OkLCV-EG ------------------------------------------------------------ ToLCV-TW ---------------------CTTCCCTGTACGACTCTCTCCCTCTACCACAATACTCAT 39 ToLCV-Au --------------------------------------------AATCAATAGAAAAAAA 16 ToLCV-Ugfseq ------------------------ACGACTA-------TCA---CTCA-----GACACCC 32 ATLCV-TZ GGGTCTTAAT-----GGCCGCGCAGCGGTAGTTAGA--ACA---TTCTGT---GCCGCCC 77 TbLCZwV-md CGCTTTTGTATT---AGCCGCGCAGCGGCACCACAC--ACA---TTCTCA---GAGACCC 88 TbLCZwV GGGCCTCCAA-----GGCCGCGCAGCGGCACCACAC--ACA---TTCTCA---GAGACCC 77 TCSV-SA GGGTCTCCAA-----GGCCGCGCAGCGGCACCACAC--ACA---TTCTCA---GAGACCC 77 CMV-Ng CGGCCTCCAC-----GGCCGCGCAGCGGCATCCATC--ACG---TTCGCC---GATGCCC 77 TbLCV-Ch GGGTCTCCAT-----GGCCGCGCAGCGGCATGCCTT--ACA---TTATCAA--GCAGCCC 78 ToLCV-Ma GGGTCTCCAA-----GGCCGCGCAGCGGCATCCCTG--ACG---TTCTTA---GAAACCC 77 SCLV-Jr AGGTCTCCAT-----GGCCGCGCAGCAT--TCCCGT--ACA---TTATCA---GCAGCCC 75 ToLCV-Ph ---------------------TCGACTA----------TCG---CTCG-----GACACCC 32 CoLCV-SD CGGTCTACTT-----GGCCGCGCAGCGGCATCAACG--ACG---TTCTCC---GCCGCCC 77 OkLCV-EG ---TCTGCTT--------------TCCCCTTCA--A--TCA---CTAT-----GCCGCCC 31 ToLCV-TW GGGTCTCCAT-----GGCCGCGCAGCGGAATCCCTC--ACG---TTCTCG---GCAACCC 86 ToLCV-Au AAGTGGTTAA--------GGCACTGTGACAAATAATTG-----ACTTGAAGGACCCACTT 63 ToLCV-Ugfseq AACATTCAAGTTCCTCTGGAACTTGATCAAATGAAGAAGA-AAG--AAAAGGAGAAACAT 89 ATLCV-TZ ACTCTTCAAGTTCCTCTGGAACTTGATCGAAAGAAGAACA-TAA--GAAAGGAGAAACAT 134 TbLCZwV-md ACTCTTCAAGTCCCTCAGGGACTTGATCAAAAGAAGAAGA-AGA--GAAAGGAGAAATAT 145 TbLCZwV ACCCTTCAAGTTCCTCAGGGACTTGATCAAAAGAAGAAGA-AGA--GAAAGGAGAAATAT 134 TCSV-SA ACTCTTCAAGTTCCTCAGGGACTTGATCAAAAGAAGATGA-AGA--AAAAGGAGAAATAT 134 CMV-Ng ATCGTTGAAGTTCATCAGGAACCTGAGTGAAGGAGGAAGC-ACA--GAAGGGAGAAACAT 134 TbLCV-Ch ACTCTTCAAGTTCTTCGGGAACTTGATCAAATGATGAAGA-TAA--AAAAGGAGAAACAA 135 ToLCV-Ma ACTCTTCAAGTTCTTCGGGAACTTGATCGAAAGAAGAAGA-AAG--AAAAGGACAAACAA 134 SCLV-Jr AAACTTCAAGTTCTTCCGGAACTTGATCAAAAGAAGAAGA-AGA--AAAAGGAGAAACAT 132 ToLCV-Ph ATTCTTCAAGTTCTTTTGGAACTTGATTGAAAGATGAAGA-AGG--AAAAGGACTAACAA 89 CoLCV-SD ATTCTTCAAGTTCTTCTGGAACTTGGTCGAACGAAGAAGA-CAA--AAAAGGAGAAACAT 134 OkLCV-EG ATTCTTCAAGTTCTTCGGGAACTTGGTCGAACGAAGAAGA-CAA--AAAAGGAGAAACAT 88 ToLCV-TW ATTCTACAAGTTCTACTGGAACTTGATCAAATGAAGAAGA-ATT--AAAAGGAGAAATAT 143 ToLCV-Au ACTGCTGGGTCCGTGTTAATTATTTATCCAAAAATAAAAAGAAA--AAGAAAATAGATAT 121 * * ** * * * * * * * ToLCV-Ugfseq A-TCCTTCAACGGAGGTGTAAAAATCTTATCTAAATTACA-TTTAAATTATGATACTGAA 147 ATLCV-TZ AATCCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATACTGAA 194 TbLCZwV-md AAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACTGAA 205 TbLCVZbw AAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACTGAA 194 TCSV-SA AAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACTGAA 194 CMV-Ng AAACCTCCGGAGGAGCTTGGAAGATCTTATCCAAATTAGCCTTGATATTATGATATTGAA 194 TbLCVCh AA-CCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTA 194 ToLCVMa AAACCTCTACAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTA 194 SCLV-Japan AA-CCTCTAAAGGAGGCGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTA 191 ToLCVPh AAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTTGCACTTAAATTATGAAACTGTA 149 CoLCV-Sudan AAGGAGCTGGAGGCTCCTGAAAAATCCTCTCTAAATTACTATTTAAATTATGAAATTGTA 194 OkLCV-EG AAGGAGCTGGAGGCTCCTGAAAAATCCTCTCTAAATTACTATTTAAATTATGAAATTGTA 148 ToLCV-TW AAACCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTA 203 ToLCV-Au GCAGTTAAAATTAGTTACCACAATAACTAATTGATTTACCATTTACCCAA--ATGGTAAA 179 * * * ** * * * * * *
Incidence, distribution and characteristics of major tomato leaf curl and mosaic virus diseases 199 Fig.A.6.1b) continued ToLCV-Ugfseq AAATAAAATCCTTAGGGAGT---TTCTCCCTAATAA------TAGCCAA---AGCGGCTT 195 ATLCV-TZ AAATGAAATCTTTAGGGAGT---TTCTCCCTAATAA------TAGCCAG---AGCGGCTT 242 TbLCZwV-md AAATAAAATCTTTAGGGAGT---TTTTCCCTAATAA------TAGCCAT---AGCTGCTT 253 TbLCZwV AAATAAAATCTTTAGGGAGT---TTTTCCCTAATAA------TAGCCAT---AGCTGCTT 242 TCSV-SA AAATAAAATCTTTAGGGAGT---TTTTCCCTAATAA------TAGCCAT---AGCGGCTT 242 CMV-Ng ATATATAATCTTTGGGGAGT---TTCTCCTTAATAA------TAGCCAA---CGCAGCTT 242 TbLCV-Ch AAACAAAATCTTTAGGAGCT---AACTCCTTAATTA------CATTAAG---AGCCTCTG 242 ToLCV-Ma AAACAAAATCTTTAGGAGCT---AACTCCTTAATTA------CATTAAG---AGCCTCTG 242 SCLV-Jr AAACAAAATCTTTAGGGGCT---AATTCCCTAATTA------CATTAAG---AGCCTCTG 239 ToLCV-Ph AAACAAAATCTTTTGGTGCT---AATTCCCTAATTA------CATTAAG---AGCCTCTG 197 CoLCV-SD AAACAAAATCTTTGGGAGCT---AACTCCCTTATAA------CCCTAAG---AGCCTCTG 242 OkLCV-EG AAACAAAATCTTTGGGAGCT---AACTCCCTTATAA------CCCTAAG---AGCCTCTG 196 ToLCV-TW AAACAAAATCTTTGGGAGCT---TTCTCCCTTAATA------TATTGAG---GGCCTCAG 251 ToLCV-Au TATTGAGACACCGATAG-GTAAATTGTCCCCAATTGAATCGGTGTCTATTGGGGACAATG 238 * * * * * * * ToLCV-Ugfseq CA--------GCGGAACCTGCGTTTAA----TGCCTCGG-CGGCTGCGT-CGTTAGCATT 241 ATLCV-TZ CA--------GCGGATCCTGCGTTTAA----TGCCTCGG-CGCATGCGT-CGTTAGCATT 288 TbLCZwV-md CA--------GCGGAACCTGCGTTTAA----AGCGTCTG-CGCATGCGT-CGTTAGCATT 299 TbLCZwV CA--------GCGGAACCTGCGTTTAA----AGCGTCGG-CGCATGCGT-CGTTAGCATT 288 TCSV-SA CA--------GCGGAACCTGCGTTTAA----AGCGTCGG-CGCATGCGT-CGTTAGCATT 288 CMV-Ng CA--------GCGGAACCTGCGTTTAA----CGCCTCGG-CGGCTGCGT-CATTAGCCTT 288 TbLCV-Ch AC--------TTACTGCCGCTGTTAAG----TGCCTGGG-CGTAAGCGT-CATTGGCTGT 288 ToLCV-Ma AC--------TTACTGCCGCTGTTAAG----TGCCTGTG-CGTAAGCGT-CATTGGCTGT 288 SCLV-Jr AC--------TTACTGCCGCTGTTAAG----TGCCTTGG-CGTAAGCGT-CGTTGGCCGA 285 ToLCV-Ph AC--------TTACTTCCTGTGTTAAT----CGCTTTGG-CGTAAGCGT-CATTGGCTGA 243 CoLCV-SD CC--------TTACTTCCTGCGTTAAG----CGCTGCGG-CGTAAGCGT-CATTGGCGGT 288 OkLCV-EG CC--------TTACTTCCTGCGTTAAG----CGCTGCGG-CGTAAGCGT-CATTGGCGGT 242 ToLCV-TW CT--------TTGGACCCTGAATTGAT----TGCCTCGG-CATATGCGT-CGTTGGCAGA 297 ToLCV-Au GG---TATCATCGTTTTTTGGACTAAA---ATGCCCCTGTCAT-TGTGTCTGTGAGGCGC 291 * ** * * * * * ToLCV-Ugfseq CTGGCAGCCTCCT-----CTAGCACTTCGTCC-GTCGACCTGAAATTCTCCC-ATTCGA- 293 ATLCV-TZ ATGGCAGCCTCCT-----CTAGCACTTCTGCC-GTCGATCTGGAATTCCCCCCATTCGA- 341 TbLCZwV-md CTGGCAGCCTCCT-----CTAGCACTTCGTCC-GTCGACCTGGAATTCTCCCCATTCAA- 352 TbLCZwV CTGGCAGCCTCCT-----CTAGCACTTCGTCC-GTCGACCTGGAATTCTCCCCATTCAA- 341 TCSV-SA TTGGCAGCCTCCT-----CTAGCACTTCTGCC-GTCGACCTGGAATTCTCCCCATTCAA- 341 CMV-Ng ATGGCAGCCGCCT-----CTAGCACTACGTCC-GTCGACCTGGAACTCTCCCCACTCGA- 341 TbLCV-Ch CTGTTGACCCCCT-----CTTGCAGATCTTCC-GTCGATCTGAAACTCTCCCCATTCGA- 341 ToLCV-Ma CTGTTGACCCCCT-----CTTGCAGATCTTCC-GTCGATCTGAAACTCTCCCCAATCGA- 341 SCLV-Jr TTGCTGACCCCCT-----CTTGCAGATCGTCC-GTCGATCTGAAACTCTCCCCACTCGA- 338 ToLCV-Ph TTGTTGTCCCCCT-----CTTGCAGATCTTCC-GTCGACCTGAAACTCTCCCCATTCGA- 296 CoLCV-SD CTGCTGTCCTCCT-----CTTGCAGATCTTCC-GTCAATCTGGAATTCTCCCCATTCCA- 341 OkLCV-EG CTGTTGTCCTCCT-----CTTGCAGATCTTCC-GTCGATCTGGAATTCTCCCCATTCCA- 295 ToLCV-TW TTGGCAACCTCCT-----CTAGCTGATCTTCC-ATCGACCTGGAAAATTCCATGATCAA- 350 ToLCV-Au GTCGTAGTGCGCT-----GCAAAAGTAAGACCTGCAACTTTCCCAAACTGAAATTCCGGC 346 * ** ** * * * ToLCV-Ugfseq --------GGGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGAT--TTA 343 ATLCV-TZ --------GTGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGAT--TTA 391 TbLCZwV-md --------GTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGAT--TTA 402 TbLCZwV --------GTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGAT--TTA 391 TCSV-SA --------GTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGAT--TTA 391 CMV-Ng --------TGCTATCACCGTCCTTCTCGATGTAGGACTTGACGTCGGAACACGAC--TTA 391 TbLCV-Ch --------GGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGCCGGAGCTGGAT--TTA 391 ToLCV-Ma --------GGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGAT--TTA 391 SCLV-Jr --------GGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGAT--TTA 388 ToLCV-Ph --------GGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGAT--TTA 346 CoLCV-SD --------GTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGAT--TTA 391 OkLCV-EG --------GTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGAT--TTA 345 ToLCV-TW --------GCACGTCTCCGTCTTTCTCCATATAGGTTTTGACATCTGTTGAGCTC--TTA 400 ToLCV-Au ATAACT--TC-CGATTCCGAGCTCCG-ATTGCAACACGCGCGGGCGGTGGGACATG-TTA 401 ** * * * * * * ***
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Incidence, Distribution and Charact
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Charles SSEKYEWA Incidence, Distrib
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CONTENTS 1 CHAPTER 1...............
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ACKNOWLEDGEMENT The following perso
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vii 7 mosaic virus (CMV), Alfalfa m
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ix 9 Consequently, our findings con
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SAMENVATTING Tomaat is een economis
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xiii 13 Beide genhomologie percenta
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xv 15 dit onderzoek geven ook aan d
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LIST OF TABLES xvii 17 Table Page 1
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ACRONYMS AND ABBREVIATIONS xix 19 A
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Abbreviation Word in full PCR Polym
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Incidence, distribution and charact
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Table 2.1: The orthography of some
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A B Incidence, distribution and cha
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A B Incidence, distribution and cha
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A Incidence, distribution and chara
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Isolate IG1 Incidence, distribution
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1600 500 700 200 Incidence, distrib
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1200 1200 (A) IG1 (ToLCV-UG) PAL1v
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78 Incidence, distribution and char
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87 87 Incidence, distribution and c
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A A C D Incidence, distribution and
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Opaque and not smeared Translucent
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Rainfall (cm) Temp. Cº Mean Whitef
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