Incidence, Distribution and Characteristics of Major Tomato Leaf ...
Incidence, Distribution and Characteristics of Major Tomato Leaf ... Incidence, Distribution and Characteristics of Major Tomato Leaf ...
Incidence, distribution and characteristics of major tomato leaf curl and mosaic virus diseases 196 Fig.A.6.1a) continued TbLCZbwV CATTCTGGCAGCCTCCTCTAGCACTTCGTCCGTCGACCTGGAATTCTCCCCATTCAAGTG 318 TbLCZbwV-md CATTCTGGCAGCCTCCTCTAGCACTTCGTCCGTCGACCTGGAATTCTCCCCATTCAAGTG 320 ATLCV-Tz CATTATGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTG 318 ChaMV-Ng CCTTATGGCAGCCGCCTCTAGCACTACGTCCGTCGACCTGGAACTCTCCCCACTCGATGC 318 AEV-NP CTGTCTGTTGACCTCCTCGTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGGG 318 OkLCV-EG CGGTCTGTTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTG 318 CoLCV-SD CGGTCTGCTGTCCTCCTCTTGCAGATCTTCCGTCAATCTGGAATTCTCCCCATTCCAGTG 318 ToLCV-Ma CTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGG 318 TbLCV-Ch CTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGAGGG 318 ToLCV-UGrev CCA--GCCGTGCTGCTGTCCCC----ACTGCCCCAGGCACAAGCAGACGTCGATCATGGA 295 EACMV-MW GCA--GCCGTGCTGCTGTCCCC----ATTGTCCAAGGCACAAACAAGCGACGATCATGGA 295 TYLCV-Is/PT GCA--GCCGTGCTGCTGTCCCC----ATTGTCCAAGGCACAAACAAGCGACGATCATGGA 295 TYLCV-JR/Szka GCA--GCCGTGCTGCTGTCCCC----ATTGTCCAAGGCACAAACAAGCGACGATCATGGA 295 TYLCV-OM GC---------------------------------------------------------- 243 TLCV-SD/Gez GCA--ACCGTGCTGCTGTCCCC----ATTGTCCCAGGCACAAACAAGCGACGGTCATGGA 295 ToLCV-IN/Bg GCA--AGCGTGCTGCTGTCCGC----ATTGTCCGCGGCACAAA-GGGAAAGGA--ATGGG 235 ToLCV-TW GCTG-------CCCCC----------ACTGTCCTCGTCACAAACAAAAAGAGTTCATGGG 247 TbLCZbwV TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGA-ATG 377 TbLCZbwV-md TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGA-ATG 379 ATLCV-Tz TATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGA-ATG 377 ChaMV-Ng TATCACCGTCCTTCTCGATGTAGGACTTGACGTCGGAACACGACTTAGCTCCCTGA-ACG 377 AEV-NP TGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGTGCTGGATTTAGCTCCCTGA-ATG 377 OkLCV-EG TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGA-ATG 377 CoLCV-SD TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGA-ATG 377 ToLCV-Ma TGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGA-ATG 377 TbLCV-Ch TGTCTCCGTCCTTGTCGATGTAGGACTTGACGCCGGAGCTGGATTTAGCTCCCTGA-ATG 377 ToLCV-UGrev CTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAG-CCCTGATGTT 354 EACMV-MW CGTTCCGGCCCATGTATCGAAAGCCCAGAATGTACAGAATGTACAGAAG-TCCTGATGTT 354 TYLCV-Is/PT CGTACAGGCCCATGTACCGGAAGCCCAGAATATACAGAATGTATCGAAG-CCCTGATGTT 354 TYLCV-JR/Szka CGTACAGGCCCATGTACCGGAAGCCCAGAATATACAGAATGTATCGAAG-CCCTGATGTT 354 TYLCV-OM --TACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAG-CCCTGATGTT 300 TLCV-SD/Gez CATACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAG-TCCTGATGTT 354 ToLCV-IN/Bg CCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGG-TCCTGATGTT 294 ToLCV-TW TGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAAAAG-CCCAGATGTT 306 ** * ** * ** ** TbLCZbwV TTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGG-TGATTCTT 436 TbLCZbwV-md TTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGG-TGATTCTT 438 ATLCV-Tz TTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTG-TTATTTTT 436 ChaMV-Ng TTTGGATGGAAATGTGTTGATCGAGTTGGGGAGACCAGATCGAAGAATCGC-TGATTTTG 436 AEV-NP TTCGGATGGAAATGTGCTGACCTGTTTGGGGAGACCAGGTCGAAGAATCGT-TGATTCTT 436 OkLCV-EG TTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTC-TGATTTTG 436 CoLCV-SD TTTGGATGGAAATGTGTTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTC-TGATTTTG 436 ToLCV-Ma TTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTG-TTATTCTT 436 TbLCV-Ch TTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTG-TTATTCGT 436 ToLCV-UGrev CCTCGGGGT---TGTGAAGGCCC--------ATGTAAGGTT---CAGTCGTACGAGCAGA 400 EACMV-MW CCTCGAGGA---TGTGAAGGCCC--------ATGTAAGGTG---CAGTCCTATGAACAGA 400 TYLCV-Is/PT CCCCGTGGA---TGTGAAGGCCC--------ATGTAAAGTA---CAGTCTTATGAGCAAC 400 TYLCV-JR/Szka CCCCGTGGA---TGTGAAGGCCC--------ATGTAAAGTA---CAGTCTTATGAGCAAC 400 TYLCV-OM CCCCGTGGA---TGTGAAGGCCC--------ATGTAAAGTC---CAGTCTTATGAGCAGC 346 TLCV-SD/Gez CCCCGTGGA---TGTGAAGGCCC--------ATGTAAGGTC---CAGTCTTATGAGCAAC 400 ToLCV-IN/Bg CCTAGAGGC---TGTGAGGGTCC--------ATGTAAGGTC---CAATCCTTTGAGTCAA 340 ToLCV-TW CCTCGTGGT---TGTGAAGGCCC--------ATGTAAGGTA---CAGTCATTTGAACAGC 352 * * **** * * * * ** * ** *
Incidence, distribution and characteristics of major tomato leaf curl and mosaic virus diseases 197 Fig.A.6.1a) continued TbLCZbwV GCAGTTGAATTTTCCCTCGAA---CTGAATAAGCACGTGGAGATGAGGTTCCC-CATTTT 492 TbLCZbwV-md GCAGTTGAATTTTCCCTCGAA---CTGAATAAGCACGTGGAGATGAGGTTCCC-CATTTT 494 ATLCV-Tz GCAGTTGAATTTTCCCTCGAA---CTGAATAAGCACGTGGAGATGAGGCTCCC-CATCTT 492 ChaMV-Ng GCACTTGTATTTGCCCTCGAA---CTGAATGAGGGCATGCAGATGAGGTTGCC-CATCCT 492 AEV-NP GCACTGATATTTCCCTTCGAA---CTGGATGAGCACATGGAGATGAGGGCTCC-CATCTT 492 OkLCV-EG GCACTTGAACTTCCCTTCGAA---CTGGAGAAGCACATGTAGATGAGGTTGGC-CATCCT 492 CoLCV-SD GCACTTGAACTTCCCTTCGAA---CTGGAGAAGCACATGTAGATGAGGTTGGC-CATCCT 492 ToLCV-Ma GCACTGGTATTTCCCTTCGAA---CTGGATAAGCACGTGGAGATGAGGGCTCC-CATCTT 492 TbLCV-Ch GCAGACGTATTTCCCTTCGAA---CTGGATAAGCACGTGGAGATGAGGGCTCC-CATCTT 492 ToLCV-UGrev GAGATGATGTTAAGCATACTG---GTGTTGTCCGTTGTGTTAGTGATGTTACTTCGTGGG 457 EACMV-MW GAGACGATGTTAAGCACACCG---GTGCTGTGCGTTGTGTTAGTGATGTTACT-CGTGGT 456 TYLCV-Is/PT GGGATGATATTAAGCATACTG---GTATTGTTCGTTGTGTTAGTGATGTTACT-CGTGGA 456 TYLCV-JR/Szka GGGATGATATTAAGCATACTG---GTATTGTTCGTTGTGTTAGTGATGTTACT-CGTGGA 456 TYLCV-OM GGGATGATATTAAGCACACTG---GTGTTGTTCGTTGTGTTAGTGATGTTACT-CGTGGA 402 TLCV-SD/Gez GGGATGATATTAAGCATACTG---GTATTGTTCGTTGTGTTAGTGATGTTACT-CGTGGA 456 ToLCV-IN/Bg GACACGATATAATTCATATAG---GGAAGGTCATGTGTATTAGTGATGTCACT-CGCGGT 396 ToLCV-TW GTCATGATATAGCCCATGTGG---GCAAGGTAATATGTGTGTCCGATGTCACA-CGAGGT 408 * * * ** * * TbLCZbwV CGTGTAGCTCTCTGCAGATTTTGATGTATTTTTTATTGGTGGGTGTTTCAAGGTTTAATA 552 TbLCZbwV-md CGTGTAGCTCTCTGCAGATTTTGATGTATTTTTTATTTGTGGGTGTTTCAAGGTTTAATA 554 ATLCV-Tz CGTGTAGTTCTCTGCAAATTTTGATGTATTTTTTATTTGTTGGAGTATCAGTATTTATTA 552 ChaMV-Ng CGTGTAACTCACGACAAACTTTGATGTATTTCTGGTTCGTGGGCGTGCGTAAGCTTCGTA 552 AEV-NP CGTGTAGTTCTCTGCAGATCTTGATGTATTTTTTGTTTGTTGGGGGTTGGAGATTTAATA 552 OkLCV-EG CGTGAAGCTCTCTGCAGATCTTGATATATTTCTTGTTTGAAGCTGTGCTTATTTGCTGTA 552 CoLCV-SD CGTGAAGCTCTCTGCAGATCTTGATATATTTCTTGTTTGAAGCTGTGCTTATTTGTTGAA 552 ToLCV-Ma CGTGAAGCTCTCTGCAGATTTTGATATATTTCTTGTTGGTTGGGGTGTTTAGGTTTTGTA 552 TbLCV-Ch CGTGAAGCTCTCTGCAGATTTTGATATATTTCTTATTAGTTGGTGTCTCTAGGGCTTGTA 552 ToLCV-UGrev TCGGGTA-TTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGG 516 EACMV-MW TCGGGTA-TTACTCATAGGGTAGGGAAGAGATTTTGTGTGAAGTCAATATATGTTTTAGG 515 TYLCV-Is/PT TCTGGAA-TTACTCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGG 515 TYLCV-JR/Szka TCTGGAA-TTACTCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGG 515 TYLCV-OM TCTGGAA-TTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGG 461 TLCV-SD/Gez TCCGGAA-TTACCCACAGAGTGGGGAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGG 515 ToLCV-IN/Bg ACGGGGT-TAACACATAGAGTTGGTAAGCGGTTTTGTGTCAAGTCAGTATACGTTTTGGG 455 ToLCV-TW AATGGGC-TGACCCATCGTGTTGGGAAGAGGTTTTGTGTTAAGTCCATTTATGTGTTGGG 467 * * * * * TbLCZbwV ATT-- 555 TbLCZbwV-md ATT-- 557 ATLCV-Tz ATT-- 555 ChaMV-Ng ATT-- 555 AEV-NP ATT-- 555 OkLCV-EG TTT-- 555 CoLCV-SD GTT-- 555 ToLCV-Ma ATT-- 555 TbLCV-Ch ATT-- 555 ToLCV-UGrev GAAAA 521 EACMV-MW AAAGA 520 TYLCV-Is/PT TAAAG 520 TYLCV-JR/Szka TAAAG 520 TYLCV-OM TAAAG 466 TLCV-SD/Gez TAAAG 520 ToLCV-IN/Bg TAAAA 460 ToLCV-TW TAAGA 472
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<strong>Incidence</strong>, distribution <strong>and</strong> characteristics <strong>of</strong> major tomato leaf curl <strong>and</strong> mosaic virus diseases 196<br />
Fig.A.6.1a) continued<br />
TbLCZbwV CATTCTGGCAGCCTCCTCTAGCACTTCGTCCGTCGACCTGGAATTCTCCCCATTCAAGTG 318<br />
TbLCZbwV-md CATTCTGGCAGCCTCCTCTAGCACTTCGTCCGTCGACCTGGAATTCTCCCCATTCAAGTG 320<br />
ATLCV-Tz CATTATGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTG 318<br />
ChaMV-Ng CCTTATGGCAGCCGCCTCTAGCACTACGTCCGTCGACCTGGAACTCTCCCCACTCGATGC 318<br />
AEV-NP CTGTCTGTTGACCTCCTCGTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGGG 318<br />
OkLCV-EG CGGTCTGTTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTG 318<br />
CoLCV-SD CGGTCTGCTGTCCTCCTCTTGCAGATCTTCCGTCAATCTGGAATTCTCCCCATTCCAGTG 318<br />
ToLCV-Ma CTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGG 318<br />
TbLCV-Ch CTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGAGGG 318<br />
ToLCV-UGrev CCA--GCCGTGCTGCTGTCCCC----ACTGCCCCAGGCACAAGCAGACGTCGATCATGGA 295<br />
EACMV-MW GCA--GCCGTGCTGCTGTCCCC----ATTGTCCAAGGCACAAACAAGCGACGATCATGGA 295<br />
TYLCV-Is/PT GCA--GCCGTGCTGCTGTCCCC----ATTGTCCAAGGCACAAACAAGCGACGATCATGGA 295<br />
TYLCV-JR/Szka GCA--GCCGTGCTGCTGTCCCC----ATTGTCCAAGGCACAAACAAGCGACGATCATGGA 295<br />
TYLCV-OM GC---------------------------------------------------------- 243<br />
TLCV-SD/Gez GCA--ACCGTGCTGCTGTCCCC----ATTGTCCCAGGCACAAACAAGCGACGGTCATGGA 295<br />
ToLCV-IN/Bg GCA--AGCGTGCTGCTGTCCGC----ATTGTCCGCGGCACAAA-GGGAAAGGA--ATGGG 235<br />
ToLCV-TW GCTG-------CCCCC----------ACTGTCCTCGTCACAAACAAAAAGAGTTCATGGG 247<br />
TbLCZbwV TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGA-ATG 377<br />
TbLCZbwV-md TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGA-ATG 379<br />
ATLCV-Tz TATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGA-ATG 377<br />
ChaMV-Ng TATCACCGTCCTTCTCGATGTAGGACTTGACGTCGGAACACGACTTAGCTCCCTGA-ACG 377<br />
AEV-NP TGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGTGCTGGATTTAGCTCCCTGA-ATG 377<br />
OkLCV-EG TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGA-ATG 377<br />
CoLCV-SD TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGA-ATG 377<br />
ToLCV-Ma TGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGA-ATG 377<br />
TbLCV-Ch TGTCTCCGTCCTTGTCGATGTAGGACTTGACGCCGGAGCTGGATTTAGCTCCCTGA-ATG 377<br />
ToLCV-UGrev CTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAG-CCCTGATGTT 354<br />
EACMV-MW CGTTCCGGCCCATGTATCGAAAGCCCAGAATGTACAGAATGTACAGAAG-TCCTGATGTT 354<br />
TYLCV-Is/PT CGTACAGGCCCATGTACCGGAAGCCCAGAATATACAGAATGTATCGAAG-CCCTGATGTT 354<br />
TYLCV-JR/Szka CGTACAGGCCCATGTACCGGAAGCCCAGAATATACAGAATGTATCGAAG-CCCTGATGTT 354<br />
TYLCV-OM --TACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAG-CCCTGATGTT 300<br />
TLCV-SD/Gez CATACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAG-TCCTGATGTT 354<br />
ToLCV-IN/Bg CCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGG-TCCTGATGTT 294<br />
ToLCV-TW TGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAAAAG-CCCAGATGTT 306<br />
** * ** * ** **<br />
TbLCZbwV TTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGG-TGATTCTT 436<br />
TbLCZbwV-md TTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGG-TGATTCTT 438<br />
ATLCV-Tz TTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTG-TTATTTTT 436<br />
ChaMV-Ng TTTGGATGGAAATGTGTTGATCGAGTTGGGGAGACCAGATCGAAGAATCGC-TGATTTTG 436<br />
AEV-NP TTCGGATGGAAATGTGCTGACCTGTTTGGGGAGACCAGGTCGAAGAATCGT-TGATTCTT 436<br />
OkLCV-EG TTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTC-TGATTTTG 436<br />
CoLCV-SD TTTGGATGGAAATGTGTTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTC-TGATTTTG 436<br />
ToLCV-Ma TTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTG-TTATTCTT 436<br />
TbLCV-Ch TTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTG-TTATTCGT 436<br />
ToLCV-UGrev CCTCGGGGT---TGTGAAGGCCC--------ATGTAAGGTT---CAGTCGTACGAGCAGA 400<br />
EACMV-MW CCTCGAGGA---TGTGAAGGCCC--------ATGTAAGGTG---CAGTCCTATGAACAGA 400<br />
TYLCV-Is/PT CCCCGTGGA---TGTGAAGGCCC--------ATGTAAAGTA---CAGTCTTATGAGCAAC 400<br />
TYLCV-JR/Szka CCCCGTGGA---TGTGAAGGCCC--------ATGTAAAGTA---CAGTCTTATGAGCAAC 400<br />
TYLCV-OM CCCCGTGGA---TGTGAAGGCCC--------ATGTAAAGTC---CAGTCTTATGAGCAGC 346<br />
TLCV-SD/Gez CCCCGTGGA---TGTGAAGGCCC--------ATGTAAGGTC---CAGTCTTATGAGCAAC 400<br />
ToLCV-IN/Bg CCTAGAGGC---TGTGAGGGTCC--------ATGTAAGGTC---CAATCCTTTGAGTCAA 340<br />
ToLCV-TW CCTCGTGGT---TGTGAAGGCCC--------ATGTAAGGTA---CAGTCATTTGAACAGC 352<br />
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