Diapositiva 1
Diapositiva 1
Diapositiva 1
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Requirements for PAML Analysis<br />
• A coding DNA sequence alignment in PAML format.<br />
• A treefile in newick-like format.<br />
• codeml.ctl parameter file.<br />
• PAML installed on your machine!<br />
Searching DNA sequences<br />
Download of coding sequences from different species by querying databases such as:<br />
• UniProt (http://www.uniprot.org/)<br />
• NCBI Entrez Gene (http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene)<br />
• Genome browser Ensembl (http://www.ensembl.org/).