Table of Contents (PDF) - Molecular Biology and Evolution
Table of Contents (PDF) - Molecular Biology and Evolution
Table of Contents (PDF) - Molecular Biology and Evolution
You also want an ePaper? Increase the reach of your titles
YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.
<strong>Contents</strong><br />
LETTER S<br />
211 Hypervariability <strong>of</strong> Ascidian Mitochondrial Gene Order: Exposing the Myth <strong>of</strong> Deuterostome<br />
Organelle Genome Stability<br />
Carmela Gissi, Graziano Pesole, Francesco Mastrototaro, Fabio Iannelli, Vanessa Guida, <strong>and</strong> Francesca Griggio<br />
217 Chordate Hox <strong>and</strong> ParaHox Gene Clusters Differ Dramatically in Their Repetitive Element Content<br />
Peter W. Osborne <strong>and</strong> David E.K. Ferrier<br />
221 SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment <strong>and</strong><br />
Phylogenetic Tree Building<br />
Manolo Gouy, Stéphane Guindon, <strong>and</strong> Olivier Gascuel<br />
RESEARCH ARTICLES<br />
225 Retracing <strong>Evolution</strong> <strong>of</strong> Red Fluorescence in GFP-Like Proteins from Faviina Corals<br />
Steven F. Field <strong>and</strong> Mikhail V. Matz<br />
235 A Genome-Sequence Survey for Ascogregarina taiwanensis Supports <strong>Evolution</strong>ary Affiliation but<br />
Metabolic Diversity between a Gregarine <strong>and</strong> Cryptosporidium<br />
Thomas J. Templeton, Shinichiro Enomoto, Wei-June Chen, Chin-Gi Huang, Cheryl A. Lancto,<br />
Mitchell S. Abrahamsen, <strong>and</strong> Guan Zhu<br />
249 Rapid Likelihood Analysis on Large Phylogenies Using Partial Sampling <strong>of</strong> Substitution Histories<br />
A. P. Jason de Koning, Wanjun Gu, <strong>and</strong> David D. Pollock<br />
267 Nucleotide Polymorphism at a Gene ( Pgi ) under Balancing Selection in a Butterfly Metapopulation<br />
Christopher W. Wheat, Christoph R. Haag, James H. Marden, Ilkka Hanski, <strong>and</strong> Mikko J. Fril<strong>and</strong>er<br />
283 Is<strong>of</strong>orm Divergence <strong>of</strong> the Filamin Family <strong>of</strong> Proteins<br />
Barry A. Kesner, Sharon L. Milgram, Brenda R.S. Temple, <strong>and</strong> Nikolay V. Dokholyan<br />
297 How Robust Are “Isolation with Migration” Analyses to Violations <strong>of</strong> the IM Model? A Simulation<br />
Study<br />
Jared L. Strasburg <strong>and</strong> Loren H. Rieseberg<br />
311 Phylogenetic Distributions <strong>and</strong> Histories <strong>of</strong> Proteins Involved in Anaerobic Pyruvate Metabolism in<br />
Eukaryotes<br />
Laura A. Hug, Alex<strong>and</strong>ra Stechmann, <strong>and</strong> Andrew J. Roger<br />
325 Heterogeneous Patterns <strong>of</strong> Gene-Expression Diversification in Mammalian Gene Duplicates<br />
Domènec Farré <strong>and</strong> M. Mar Albà<br />
337 A Statistical Evaluation <strong>of</strong> Models for the Initial Settlement <strong>of</strong> the American Continent Emphasizes the<br />
Importance <strong>of</strong> Gene Flow with Asia<br />
N. Ray, D. Wegmann, N.J.R. Fagundes, S. Wang, A. Ruiz-Linares, <strong>and</strong> L. Exc<strong>of</strong>fier<br />
347 Infrequent Transitions between Saline <strong>and</strong> Fresh Waters in One <strong>of</strong> the Most Abundant Microbial<br />
Lineages (SAR11)<br />
Ramiro Logares, Jon Bråte, Friederike Heinrich, Kamran Shalchian-Tabrizi, <strong>and</strong> Stefan Bertilsson<br />
359 The Cytophaga hutchinsonii ChTPSP: First Characterized Bifunctional TPS – TPP Protein as Putative<br />
Ancestor <strong>of</strong> All Eukaryotic Trehalose Biosynthesis Proteins<br />
Nelson Avonce, Jan Wuyts, Katrien Verschooten, Lies V<strong>and</strong>esteene, <strong>and</strong> Patrick Van Dijck<br />
371 A Dirichlet Process Covarion Mixture Model <strong>and</strong> Its Assessments Using Posterior Predictive<br />
Discrepancy Tests<br />
Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Nicolas Lartillot, <strong>and</strong> Hervé Philippe<br />
(<strong>Contents</strong> continued on inside back cover)<br />
Published on behalf <strong>of</strong> the Society for <strong>Molecular</strong> <strong>Biology</strong> <strong>and</strong> <strong>Evolution</strong>
(<strong>Contents</strong> continued from outside back cover)<br />
385 A Worldwide Survey <strong>of</strong> Human Male Demographic History Based on Y-SNP <strong>and</strong> Y-STR Data from the<br />
HGDP – CEPH Populations<br />
Wentao Shi, Qasim Ayub, Mark Vermeulen, Rong-guang Shao, S<strong>of</strong>ia Zuniga, Kristiaan van der Gaag, Peter de Knijff,<br />
Manfred Kayser, Yali Xue, <strong>and</strong> Chris Tyler-Smith<br />
395 Novel Venom Proteins Produced by Differential Domain-Expression Strategies in Beaded Lizards <strong>and</strong> Gila<br />
Monsters (genus Heloderma )<br />
Bryan G. Fry, Kim Roelants, Kelly Winter, Wayne C. Hodgson, Laura Griesman, Hang Fai Kwok, Denis Scanlon, John Karas,<br />
Chris Shaw, Lily Wong, <strong>and</strong> Janette A. Norman<br />
409 Indel-Associated Mutation Rate Varies with Mating System in Flowering Plants<br />
Jesse D. Hollister, Jeffrey Ross-Ibarra, <strong>and</strong> Br<strong>and</strong>on S. Gaut<br />
417 Phylodynamics <strong>of</strong> HIV-1 from a Phase-III AIDS Vaccine Trial in North America<br />
Marcos Pérez-Losada, David V. Jobes, Faruk Sinangil, Keith A. Cr<strong>and</strong>all, David Posada, <strong>and</strong> Phillip W. Berman<br />
427 Bacterial Genetic Signatures <strong>of</strong> Human Social Phenomena among M. tuberculosis from an Aboriginal Canadian<br />
Population<br />
Caitlin Pepperell, Vernon H. Hoeppner, Mikhail Lipatov, Wendy Wobeser, Gary K. Schoolnik, <strong>and</strong> Marcus W. Feldman<br />
441 Large-Scale Parsimony Analysis <strong>of</strong> Metazoan Indels in Protein-Coding Genes<br />
Frida Belinky, Ofir Cohen, <strong>and</strong> Dorothée Huchon<br />
453 An Explicit Signature <strong>of</strong> Balancing Selection for Color-Vision Variation in New World Monkeys<br />
Tomohide Hiwatashi, Yugo Okabe, Toko Tsutsui, Chihiro Hiramatsu, Am<strong>and</strong>a D. Melin, Hiroki Oota, Colleen M. Schaffner,<br />
Filippo Aureli, Linda M. Fedigan, Hideki Innan, <strong>and</strong> Shoji Kawamura<br />
465 Multiple Functional Variants in cis Modulate PDYN Expression<br />
Courtney C. Babbitt, Jesse S. Silverman, Ralph Haygood, Jennifer M. Reininga, Matthew V. Rockman, <strong>and</strong> Gregory A. Wray<br />
481 Divergence <strong>of</strong> Recently Duplicated M g -Type MADS-Box Genes in Petunia<br />
Marian Bemer, Jonathan Gordon, Koen Weterings, <strong>and</strong> Gerco C. Angenent
Change language