SIEVE User Guide

2 Setting up a Procedure
Framing the Data
Framing the Data
Use the following procedure to see the samples in Spotfire, select relevant frames from the
Spotfire Gel view, and display them using the SIEVE Framing method. For more information
about the framing method, see Appendix B, “Understanding the Framing Process.”
To frame the data
1. Close the Spotfire window.
The Set Parameters dialog box reappears and you can adjust parameters prior to framing.
For information about parameter values, see “Setting Parameters” on page 12.
2. Click Next to frame the data.
If you selected Show advanced progress info in the Submit Analysis view, a DOS
window displays the progress of the procedure.
IMPORTANT Stay in the SIEVE window when the system is processing. If you click
another window or change programs, you might disrupt the processing.
Spotfire opens, displaying the primary plot.
Primary plot: Generated by SIEVE within Spotfire, this plot represents frames colored by
the pValue to indicate significant differential expression within the frame.
Consolidated plot: Made up of several hundred to several thousand frames, this plot
shows frames of various colors, where darker frames (gels) indicate a more statistically
significant difference.
18 SIEVE User Guide Thermo Scientific