Genomics – A New Era for Cattle Breeding. Session - ICBF

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Imputation to high density • ~ 5,500 SNPs in addition to the base 7,000 • High frequency within our 3,124 HD genotyped beef and dairy animals • Increased coverage at chromosomal ends • SNPs as independent as possible
Proportion allele concordance 1.00 0.95 0.90 0.85 0.80 0.75 Imputation to HD Neither sire or MGS Sire Sire + MGS Genotyped on high density LD 50k LD+1500 LD+5500
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Genomics - A New Era for Cattle Bre
Page 3 and 4:
Session 1. Genomics & parentage ide
Page 5 and 6:
Introduction to Animal Breeding & G
Page 7 and 8:
Traditional Animal Breeding • Cal
Page 9 and 10:
Using technology of today • At bi
Page 11 and 12:
How do we use this DNA information?
Page 13 and 14: What is a SNP? • 99.9% of human D
Page 15 and 16: SNP effect on performance SNP Var M
Page 17 and 18: Indentifying Mendelian sampling ter
Page 19 and 20: Cost of sequencing has decreased Bu
Page 21 and 22: Sire …..TCACCGCTGAG….. …..CAG
Page 27 and 28: Parentage Sire 1 Sire 2 Sire 3 Sire
Page 29 and 30: Recessive genetic disorders AB AB A
Page 31 and 32: To Conclude • Differences seen be
Page 33 and 34: Genomic Advances in Parentage Verif
Page 35 and 36: U.S. Department of Agriculture, Agr
Page 37 and 38: Blood Typing >1990’s Used to dete
Page 39 and 40: Used to detect bi-allelic polymorph
Page 41 and 42: Technology Transfer via Imputation
Page 43 and 44: Impute ISAG cattle MS alleles from
Page 45 and 46: SNP haplotype to MS allele BM1824 I
Page 47 and 48: Validate Cattle with SNP and MS on
Page 49 and 50: Validate Phase, impute, check 316 S
Page 51 and 52: Validate Phase, impute, check 316 S
Page 53 and 54: Validation with DAIRY table Order:
Page 55 and 56: Microsatellite Imputation 2 nd Stud
Page 57 and 58: Initial Results 642 456 312 233 220
Page 59 and 60: Acknowledgements • BFGL (USDA-ARS
Page 61 and 62: Parentage verification Genomic sele
Page 63: LD+ content (V1-19K) • Genomic se
Page 67 and 68: • CVM • BLAD Lethal Recessives
Page 69 and 70: Major genes • 14 major genes incl
Page 71 and 72: From just 1 hair sample! Calf ID CV
Page 73 and 74: Conclusions • Custom chip - value
Page 75 and 76: Implementation of Genomic Services
Page 77 and 78: What is Genotyping? • Identifying
Page 79 and 80: Typical example of processing a Bov
Page 81 and 82: ICBF & Teagasc Genomics Conference
Page 93 and 94: Work Flow Summary • Sample assign
Page 95 and 96: IRISH CATTLE BREEDING FEDERATION Ge
Page 97 and 98: © Irish Cattle Breeding Federation
Page 99 and 100: User friendly, fully integrated, tr
Page 101 and 102: AI Company/Breed Society Order Scre
Page 103 and 104: HerdPlus® User genotype request sc
Page 111 and 112: VIEW YOUR RESULTS Genomic Evaluatio
Page 115 and 116:
Chip Type Number of animals genotyp
Page 117 and 118:
LIST OF BEEF BULLS WANTED Contact I
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© Irish Cattle Breeding Federation
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Genomics & Breeding Programs • Ge
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Pedigree dairy registrations (2011)
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Moving Beef to SNP’s for parentag
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Moving beef industry to SNP’s for
Page 129 and 130:
Quantifying the Benefits. A quick s
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Genomics – A New Era for Cattle Breeding. Session - ICBF

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