Prime User Manual - ISP
Prime User Manual - ISP
Prime User Manual - ISP
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<strong>Prime</strong> 2.1 <strong>User</strong> <strong>Manual</strong><br />
Figure 8.2. The Align Binding Sites panel.<br />
Minimum length<br />
Minimum number of SSEs that are to be aligned in scanning alignment. The default is 2.<br />
Results Text Area<br />
Results from the alignment job are displayed in this text area.<br />
8.2 The Align Binding Sites Panel<br />
The Align Binding Sites panel allows you to align the binding sites (or other structural features)<br />
of members of a family of proteins. The Align Binding Sites job first runs a Protein Structure<br />
Alignment to obtain the global alignment and then automatically generates the list of atoms to<br />
use in a pairwise alignment of the C-alpha atoms from the residues selected.<br />
To open the Align Binding Sites panel, choose Tools > Align Binding Sites in the main window.
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