Prime User Manual - ISP

54
Chapter 7: Prime–Refinement
3. Click on an incorrectly charged atom in the Workspace until its charge is correct.
The formal charge is incremented or decremented by one unit for each click.
To change PDB atom names:
1. From the Label atoms button menu on the main toolbar, choose PDB Atom Name.
2. In the Atom Properties tab of the Build panel, choose PDB Atom Name from the Property
option menu.
3. Ensure that Pick is selected in the Apply PDB atom name section, and that Atoms is chosen
from the Pick option menu.
4. Zoom in on one of the residues (middle+right mouse buttons or mouse wheel).
5. For each atom that needs renaming, enter the desired PDB atom name in the PDB atom
name text box, then click on the atom.
6. Repeat Step 4 and Step 5 for each residue whose atoms need renaming.
To change residue names:
1. From the Label atoms button menu on the main toolbar, choose Residue information.
2. In the Residue Properties tab of the Build panel, choose Residue Name from the Property
option menu.
3. Ensure that Pick is selected in the Apply residue PDB name section, and that Residues is
chosen from the Pick option menu.
4. For each residue that needs renaming, enter the desired PDB name in the Residue PDB
name text box, then click on the residue.
You might need to zoom in to select the residues (middle+right mouse buttons or mouse
wheel).
Prime 2.1 User Manual