Prime User Manual - ISP
Prime User Manual - ISP
Prime User Manual - ISP
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Chapter 4: Comparative Modeling: Edit Alignment<br />
<strong>Prime</strong> 2.1 <strong>User</strong> <strong>Manual</strong><br />
Figure 4.2. The Edit Alignment step, after Run SSP.<br />
4.4.2 Exporting and Importing SSPs<br />
You may want to save an SSP for later use. Right-click on an SSP for a menu of options,<br />
including deleting the SSP, hiding all SSPs, or opening the Export SSP panel. By default, the<br />
SSP is saved in native Schrödinger format. If there is a problem exporting a file, an error<br />
message is displayed.<br />
To import a secondary structure prediction for the query, click Import SSP and select the SSP<br />
file, which may be in FASTA or Maestro format. If necessary, use the seqconvert utility to<br />
change the file format. (See Section 12.2 for more information on seqconvert.) If the file
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