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Prime User Manual - ISP

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<strong>Prime</strong> <strong>User</strong> <strong>Manual</strong><br />

Chapter 3: <strong>Prime</strong>–Structure Prediction: Initial<br />

Steps<br />

Chapter 3<br />

This chapter outlines the initial steps in the <strong>Prime</strong>–SP workflow. In the Input Sequence step, a<br />

query sequence is imported. In the Find Homologs step, potential templates are identified, and<br />

a path is chosen: either Comparative Modeling or Threading. Later chapters describe the steps<br />

in each path in which a model is built.<br />

Figure 3.1. The Input Sequence step, initial view.<br />

<strong>Prime</strong> 2.1 <strong>User</strong> <strong>Manual</strong> 17

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