Prime User Manual - ISP

Prime User Manual
Appendix D: Error Messages and Warnings
D.1 Input Sequence
Invalid File
This message appears if the system fails to extract a valid sequence from the file.
• Check that the sequence is in one of the supported sequence file formats.
Appendix D
• If FASTA format is used, make sure there are no extra spaces between the “>” and the
sequence name, and that there are no extra spaces at the end of the line.
No Sequences Found
This message appears if the system fails to extract any sequences from the workspace.
• Check the Project Table to ensure the correct entries are included in the Workspace.
• Use Open Project in the Maestro Window to open a project.
Invalid Sequence Characters
This message appears if the sequence contains non-standard one-letter code for amino acids.
• Check that sequence uses the one-letter code and is all uppercase.
• Change/edit any non-standard characters from your sequence using an editor, and then
restart job.
D.2 Find Homologs
D.2.1 Error Messages
Multiple Templates Not Aligned
• If you select multiple templates and proceed to Edit Alignment, you are reminded that the
templates must be structurally aligned to one another.
If one of the following messages appears when you click Next to go to the Edit Alignment step,
you will not be able to proceed along the Comparative Modeling path until the problem is
resolved:
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