Prime User Manual - ISP

Table 12.1. Keywords for the seqconvert utility (Continued)
Option Description
-ali Read an alignment in the input file
Chapter 12: Command-Line Utilities
-pdb_use_atoms Use ATOM (not SEQRES) records with PDB files
Input File Formats:
-iany Autodetect input file format
-inative Input file in native (Schrödinger) format
-ifasta Input file in FASTA format
-ipdb Input file in PDB format
-inbrf_pir Input file in NBRF-PIR format
-itext_plain Input file in TEXT-PLAIN format
-igcg Input file in GCG format
-iswissprot Input file in SWISS-PROT format
-igenbank Input file in GENBANK format
-incbi Input file in NCBI format
-iphylip Input file in PHYLIP format
-inexus_paup Input file in NEXUS-PAUP format
-iselex Input file in SELEX format
-istaden Input file in STADEN format
-ipfam_stockholm Input file in PFAM-STOCKHOLM format
-icasp Input file in CASP format
Output File Formats:
-onative Output file in native (Schrödinger) format
-ofasta Output file in FASTA format
-onbrf_pir Output file in NBRF-PIR format
-otext_plain Output file in TEXT-PLAIN format
-ogcg Output file in GCG format
-oswissprot Output file in SWISS-PROT format
-ocasp Output file in CASP format
-ogenbank Output file in GENBANK format
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