Biomedical Engineering – From Theory to Applications

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16 Biomedical Engineering – From Theory to Applications MeSH is a hierarchical vocabulary covering biomedical and health-related topics. GeneOntology is a hierarchical vocabulary for molecular biology covering cellular components, biological processes and molecular functions. PIKB: Pathways and Interaction Knowledge Base PIKB (http://linkedlifedata.com/) allows you to execute arbitrary queries in the semantic network. For example: "Select pathways controlled by the expression of genes located in a specific chromosome". You can also use sets of declarative rules to customize the criteria for identifying redundant information. For example: "All molecular interactions composed by a related Uniprot accession number, a Uniprot cross-reference identifier or an Entrez-Gene identifier and coming from different data sources are equivalent". 2.3.4 Networks analysis Ali Baba PubMed Shows the connection of separate record of terms such as cells, drugs, tissues, diseases, reactions, enzymes and compounds of the KEGG (Kyoto encyclopedia of genes and genomes), nutrients, proteins and genes, UniProt and NCBI Taxonomy species. Once the sample has identified links of the articles found as protein-protein interactions, localization of proteins, nutrients and genes (http://alibaba.informatik.hu-berlin.de/). PubGene Find the proteins and genes related documents. It shows the quantity of items for each node and its relationships (http://www.pubgene.org/tools/Network/Subset.cgi).
Biomedical Web, Collections and Meta-Analysis Literature Applications 3. Conclusion The use of web apps investigated in this work makes it possible to extract, analyze and manage an automated literature, efficient, prompt, timely, comprehensive and organized to facilitate handling of large amounts of documentary records simultaneously, choose from the vast amount of the most relevant information available, handle the selected records and learn the ways of analysis of latest digital literature, from which it can and must extract information according to the needs and challenges of our time. Because the constantly actualization and the release of new and innovative internet tools, we have a blog with news about Biomedical Web, Collections and Meta-Analysis Literature Applications: http://biiiogeek.blogspot.com/ 4. Acknowledgements Roberto Calderón for retrieval information and discussions, Claudia Itzel Pedraza for some data about retrieval information, Jack Guillén, Teresita Amezcua and Francisco Castillo for revisions and corrections to the text. Founds DGAPA, UNAM Project PAPIME PE 201509 and CONACYT 13276. 5. Append Web apps that process literature with one or more bibliographic meta-analysis methods Batch Citation Matcher http://www.ncbi.nlm.nih.gov/entrez/citmatch_help.html#JournalLists PubMed Retractions http://pmretract.heroku.com/journals e-LiSe - text mining tool for Medline data - run http://miron.ibb.waw.pl/elise/run.html eGIFT - extracting Gene Information From Text http://biotm.cis.udel.edu/eGIFT/index.php Biomedical Informatics Group : PubDNA Finder http://servet.dia.fi.upm.es:8080/pubdnafinder BOND Web Portal http://bond.unleashedinformatics.com/Action? eGIFT - extracting Gene Information From Text http://biotm.cis.udel.edu/eGIFT MEDSUM - THE MEDLINE/PubMed SUMMARY TOOL: research PubMed and Medline data http://webtools.mf.uni-lj.si/public/medsum.html Meva - MedLine Postprocessor http://www.med-ai.com/meva/index.html Twease http://twease.org/medline/app?component=clearSettingsDirectLink&page=Home&servic e=direct&session=T BioText: Project Homepage http://biotext.berkeley.edu/ BITOLA - Biomedical Discovery Support System http://ibmi.mf.uni-lj.si/bitola/?oe=bitola 17
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120 6. Conclusion Biomedical Engine
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180 16. Acknowledgments Biomedical
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190 R* M M M M MR*M O O O O M O R*
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196 Fig. 9. Chemical structure of 5
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198 Relative Intensity (AU) Biomedi
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204 2. Preparation of IO nanopartic
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454 In this case, the eigenvalues a
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Biomedical Engineering – From Theory to Applications

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