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Target Discovery and Validation Reviews and Protocols

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Gene <strong>Target</strong> <strong>Discovery</strong> 129<br />

41. Berry, R., Stevens, T. J., Walter, N. A., et al. (1995) Gene-based sequence-taggedsites<br />

(STSs) as the basis for a human gene map. Nat. Genet. 10, 415–423.<br />

42. Houlgatte, R., Mariage-Samson, R., Duprat, S., et al. (1995) The Genexpress<br />

index: a resource for gene discovery <strong>and</strong> the genic map of the human genome.<br />

Genome Res. 5, 272–304.<br />

43. Velculescu, V. E., Zhang, L., Vogelstein, B., <strong>and</strong> Kinzler, K. W. (1995) Serial<br />

analysis of gene expression. Science 270, 484–487.<br />

44. Yamamoto, M., Wakatsuki, T., Hada, A., <strong>and</strong> Ryo, A. (2001) Use of serial analysis<br />

of gene expression (SAGE) technology. J. Immunol. Methods 250, 45–66.<br />

45. Silva, A. P., De Souza, J. E., Galante, P. A., Riggins, G. J., De Souza, S. J., <strong>and</strong><br />

Camargo, A. A. (2004) The impact of SNPs on the interpretation of SAGE <strong>and</strong><br />

MPSS experimental data. Nucleic Acids Res. 32, 6104–6110.<br />

46. Saha, S., Sparks, A. B., Rago, C., et al. (2002) Using the transcriptome to annotate<br />

the genome. Nat. Biotechnol. 20, 508–512.<br />

47. Unneberg, P., Wennborg, A., <strong>and</strong> Larsson, M. (2003) Transcript identification by<br />

analysis of short sequence tags—influence on tag length, restriction site <strong>and</strong> transcript<br />

database. Nucleic Acid Res. 31, 2217–2226.<br />

48. Datson, N. A., van der Perk-de Jong, J., van den Berg, M. P., de Kloet, E. R., <strong>and</strong><br />

Vreugdenhil, E. (1999) MicroSAGE: a modified procedure for serial analysis of<br />

gene expression in limited amounts of tissue. Nucleic Acids Res. 27, 1300–1307.<br />

49. Peters, D. G., Kassam, A. B.,Yonas, H., O’Hare, E. H., Ferrell, R. E., <strong>and</strong> Brufsky,<br />

A. M. (1999) Comprehensive transcript analysis in small quantities of mRNA by<br />

SAGE-lite. Nucleic Acids Res. 27, e39.<br />

50. Ye, S. Q., Zhang, L. Q., Zheng, F., Virgil, D., <strong>and</strong> Kwiterovich, P. O. (2000)<br />

miniSAGE: gene expression profiling using serial analysis of gene expression<br />

from 1 microg total RNA. Anal. Biochem 287, 1444–1452.<br />

51. Brenner, S., Johnson, M., Bridgham, J., et al. (2000) Gene expression analysis by<br />

massively parallell signature sequencing (MPSS) on microbead arrays. Nat.<br />

Biotechnol. 18, 630–634.<br />

52. Schena, M., Shalon, D., Davis, R. W., <strong>and</strong> Brown, P. O. (1995) Quantitative monitoring<br />

of gene expression patterns with a complementary DNA microarray.<br />

Science 270, 467–470.<br />

53. Chee, M., Yang, R., Hubbell, E., et al. (1996) Accessing genetic information with<br />

high-density DNA arrays. Science 274, 610–614.<br />

54. Duggan, D. J., Brittner, M., Chen, Y., Meltzer, P., <strong>and</strong> Trent, J. H. (1999) Expression<br />

profiling using cDNA microarrays. Nat. Genet. 21 (Suppl. 1), 10–14.<br />

55. Schulze, A. <strong>and</strong> Downward, J. (2001) Navigating gene expression using microarrays—a<br />

technical review. Nat. Cell Biol. 3, E190–E195.<br />

56. Chung, C. H., Bernard, P. S., <strong>and</strong> Peron, C. M. (2002) Molecular portraits <strong>and</strong> the<br />

family tree of cancer. Nat. Genet. 32 (Suppl. 2), 533–540.<br />

57. Weeraratna, A. T., Nagel, J. E., de Mello-Coelho, V., <strong>and</strong> Taub, D. D. (2004) Gene<br />

expression profiling: from microarrays to medicine. J. Clin. Immunol. 24, 213–224.<br />

58. Penn, S. G., Rank, D. R., Hanzel, D. K., <strong>and</strong> Barker, D. L. (2000) Mining the human<br />

genome using microarrays of open reading frames. Nat. Genet. 26, 315–318.

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